Browse Element(s) Details


Os.6176.1.S1_at

Description gb:AK073704.1
DB_XREF= gi:32983727
TID=Os.6176.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060E10, full insert sequence.
FL= gb:AK109374.2 gb:AK073704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4337011/11Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43320Os.48334.1.S1_at11/118+27243191..27246096membrane protein, putative, expressed
LOC_Os08g43334Os.27716.2.S1_a_at11/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27716.1.S1_at10/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27482.1.A1_at1/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43350OsAffx.29646.1.S1_x_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43350Os.7601.1.S1_s_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43360Os.57567.1.A1_s_at11/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43360Os.57567.1.A1_at2/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43370Os.6176.1.S1_at11/118+27270832..27273595Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase family protein, expressed
LOC_Os08g43380Os.10530.1.S1_at11/118+27276133..27281040RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g43390Os.17180.1.S1_at11/118+27287682..27289992Cytochrome P450 78A3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6176.1.S1_at--1035--10031Chr08:27273043..27273067 (25 bp)
TAGTCAATTCGTCGGCACATATCGC
LOC_Os08g43370
Os.6176.1.S1_at--835--3571Chr08:27273060..27273084 (25 bp)
CATATCGCACTTGTGGTCACTGGTG
LOC_Os08g43370
Os.6176.1.S1_at--886--2351Chr08:27273127..27273151 (25 bp)
AAAGCTCTTCAGACTTGCTGCCTGT
LOC_Os08g43370
Os.6176.1.S1_at--173--9111Chr08:27273142..27273166 (25 bp)
TGCTGCCTGTTGAGATGGTTTCACA
LOC_Os08g43370
Os.6176.1.S1_at--585--1331Chr08:27273170..27273194 (25 bp)
AGAGGGAGTGCTCACTTGGTTCACT
LOC_Os08g43370
Os.6176.1.S1_at--489--1531Chr08:27273203..27273227 (25 bp)
AGCAGTGTCAATGCTGTCCAGCATC
LOC_Os08g43370
Os.6176.1.S1_at--900--9471Chr08:27273303..27273327 (25 bp)
TCTGTTGCATTAGTCCTCTGTGGAA
LOC_Os08g43370
Os.6176.1.S1_at--504--2271Chr08:27273326..27273350 (25 bp)
AAATCTTGTGCTCTTTTCGTAGTAT
LOC_Os08g43370
Os.6176.1.S1_at--657--7451Chr08:27273363..27273387 (25 bp)
GTGTCTGAGACTCCAGTTTCAGTCA
LOC_Os08g43370
Os.6176.1.S1_at--325--6251Chr08:27273456..27273480 (25 bp)
GATGTTACCTATTTGTTTCCTTTGT
LOC_Os08g43370
Os.6176.1.S1_at--701--9511Chr08:27273528..27273552 (25 bp)
TCTCTGTTGCTTTACATGTCATTGC
LOC_Os08g43370
Target Sequence 
TAGTCAATTCGTCGGCACATATCGCACTTGTGGTCACTGGTGCTGGGAAAGCTGGGGCAGTGCATAAGGCATTCTCAGAT
AAGCAAAGCTCTTCAGACTTGCTGCCTGTTGAGATGGTTTCACAGCAAGAGGGAGTGCTCACTTGGTTCACTGACAAACC
AGCAGTGTCAATGCTGTCCAGCATCTGAAGCCCACTGTGTTATATAAGTTTGAAACTTTGATCCGAAGTATAAAAAGTTC
AGGGGATTTTCATTTTATTCTCTGTTGCATTAGTCCTCTGTGGAAATCTTGTGCTCTTTTCGTAGTATTATGCAGCATAA
GTGTCTGAGACTCCAGTTTCAGTCAATTGATTACCACTTTATGGGGTATTTGTCATGCGCTTGGAAATATCTAGATCAGT
ACCTGTACAATTTGATGTTACCTATTTGTTTCCTTTGTACAAAGACACTTTTGTTCAGCATTTGCTAGTTTTTTTTTTTG
CGGTTTTCTCTGTTGCTTTACATGTCATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis