Browse Element(s) Details


Os.6192.1.S1_at

Description gb:AK067473.1
DB_XREF= gi:32977491
TID=Os.6192.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0090O10.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107I12, full insert sequence.
FL= gb:AK067473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0246011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02420Os.12597.1.S1_at11/113+836177..838102YOR3513c, putative, expressed
LOC_Os03g02430OsAffx.22287.1.S1_at11/113+839585..841122pentatricopeptide, putative, expressed
LOC_Os03g02440Os.26476.1.S2_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S1_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.2.S1_x_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S2_a_at11/113+849168..854838expressed protein
LOC_Os03g02450Os.8847.1.S1_s_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.47754.1.S1_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.8847.1.S1_at8/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02460Os.6192.1.S1_at11/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02460Os.4281.1.S1_x_at1/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02470Os.43929.1.S1_s_at11/113+865605..867863expressed protein
LOC_Os03g02470Os.8823.1.S1_at11/113+865605..867863expressed protein
LOC_Os03g02480OsAffx.24943.1.S1_at11/113+884501..88804260Kd inner membrane protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6192.1.S1_at--4--5751Chr03:863787..863908 (25 bp)
GACGGCCTCGTCACAGATCTGGTGT
LOC_Os03g02460
Os.6192.1.S1_at--1058--2131Chr03:863775..863798 (24 bp)
ACAGATCTGGTGTTCCTGCTGCTGT
LOC_Os03g02460
Os.6192.1.S1_at--1093--8691Chr03:863753..863777 (25 bp)
TGTCCAAGCTGCTGAAAACCATCCC
LOC_Os03g02460
Os.6192.1.S1_at--511--2411Chr03:863566..863763 (25 bp)
AAAACCATCCCTCAGGCTGCGGCGA
LOC_Os03g02460
Os.6192.1.S1_at--210--3891Chr03:863425..863449 (25 bp)
CTGTGGCAAATCTCCGAGTCCATGC
LOC_Os03g02460
Os.6192.1.S1_at--98--1151Chr03:863409..863433 (25 bp)
AGTCCATGCTGCTCTGCACGAACAG
LOC_Os03g02460
Os.6192.1.S1_at--16--3431Chr03:863387..863411 (25 bp)
CAGACACAGCAAAGATGCCTCCGCT
LOC_Os03g02460
Os.6192.1.S1_at--253--10356Chr08:5845912..5845938 (25 bp)
TTACTACTACCCATCCTAAAATATA
NONE
Os.6192.1.S1_at--238--4911Chr03:863197..863221 (25 bp)
GCTTCATGCAATATGTAACCTGCAA
LOC_Os03g02460
Os.6192.1.S1_at--1127--6931Chr03:863123..863147 (25 bp)
GTAGCATTATAGCAGTAGCAGCCAA
LOC_Os03g02460
Os.6192.1.S1_at--227--1191Chr03:863054..863078 (25 bp)
AGTACGCTGTAATTTGTCCTCGAGT
LOC_Os03g02460
Target Sequence 
GACGGCCTCGTCACAGATCTGGTGTTCCTGCTGCTGTCCAAGCTGCTGAAAACCATCCCTCAGGCTGCGGCGACCACGTG
CTACGTGGCGGCCCACCCGAGGCTGGCCGGCGTGTCCGGCCGCTACTTCGCCGACTGCAACGAGGCCCTGCCGTCGCCGG
CCGCCACCAACCGCCACGAGGCCGAGCGGNCTGTGGCAAATCTCCGAGTCCATGCTGCTCTGCACGAACAGACACAGCAA
AGATGCCTCCGCTCCCTGACACAGCTGACTGGNTAATNTTTACCGTATTTTACTACTACCCATCCTAAAATATAATAACT
TTTATCTATAAATTTGAACAATTAAAAATACTTATATTTTAGGATGGAGGAAGTAGTGCATCNCTGTCTTTTNTCTTGTT
CCNCATTACATATATACAGCTTCATGCAATATGTAACCTGCAAATATTATAGTAGTATGAGCNCCAGTGTATAAATATAT
AGTAGTATATCTGTAGCATTATAGCAGTAGCAGCCAATTATATTAGTGATTGTATTTCCGAGATATATAATACTAGTATA
CAGTACGCTGTAATTTGTCCTCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis