Browse Element(s) Details


Os.6229.1.S1_at

Description gb:AK069630.1
DB_XREF= gi:32979654
TID=Os.6229.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025I16, full insert sequence.
FL= gb:AK099768.1 gb:AK069630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1041011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10350Os.24748.1.A1_at11/113+5256576..5259912TPR Domain containing protein, expressed
LOC_Os03g10360Os.24990.1.S1_at10/113+5262574..5265959surfeit 1, putative, expressed
LOC_Os03g10370Os.9284.1.S1_at10/113+5266711..5269680small GTP-binding protein domain containing protein, expressed
LOC_Os03g10380NANA3+5270973..5271187hypothetical protein
LOC_Os03g10390Os.9841.1.S1_at11/113+5273638..5276132expressed protein
LOC_Os03g10400Os.26947.1.S1_at11/113+5276451..5280510peptidylprolyl isomerase, putative, expressed
LOC_Os03g10410Os.6229.1.S1_at11/113+5281525..5283878expressed protein
LOC_Os03g10420Os.54045.1.S1_at11/113+5284057..5286727salt-inducible protein, putative, expressed
LOC_Os03g10430OsAffx.20052.2.S1_at11/113+5289234..5290224hypothetical protein
LOC_Os03g10430Os.51177.1.S1_at2/113+5289234..5290224hypothetical protein
LOC_Os03g10430OsAffx.20052.1.S1_x_at1/113+5289234..5290224hypothetical protein
LOC_Os03g10440OsAffx.25038.1.S1_at11/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10440OsAffx.28351.1.S1_at1/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10450Os.52540.1.A1_at11/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10450Os.52197.1.S1_at2/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10460Os.49596.1.S1_at11/113+5303750..5306872expressed protein
LOC_Os03g10469Os.50461.2.S1_at11/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10469Os.50461.1.S1_at10/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6229.1.S1_at--191--8231Chr03:5283129..5283153 (25 bp)
GGCAATGATATACTTGTTTCCGCAA
LOC_Os03g10410
Os.6229.1.S1_at--774--5571Chr03:5283266..5283290 (25 bp)
GAAATGGCTTCCTTCAATTGCTAGA
LOC_Os03g10410
Os.6229.1.S1_at--339--8851Chr03:5283594..5283618 (25 bp)
TGATGCCACCATCATATCAATAGGG
LOC_Os03g10410
Os.6229.1.S1_at--751--7691Chr03:5283617..5283641 (25 bp)
GGGTACCTGTGCTAATCTCTGATGC
LOC_Os03g10410
Os.6229.1.S1_at--1150--411Chr03:5283643..5283667 (25 bp)
ATCATCGGCACTTCGGCAGTGACCT
LOC_Os03g10410
Os.6229.1.S1_at--104--5851Chr03:5283663..5283687 (25 bp)
GACCTTCTTCACTTTCTGTCTATGA
LOC_Os03g10410
Os.6229.1.S1_at--661--9771Chr03:5283714..5283738 (25 bp)
TAATGGATGATTTTGCGTAGCTGAT
LOC_Os03g10410
Os.6229.1.S1_at--223--3451Chr03:5283743..5283767 (25 bp)
CAGTTCTGGATGTCAGCATTGCTCT
LOC_Os03g10410
Os.6229.1.S1_at--311--1551Chr03:5283757..5283781 (25 bp)
AGCATTGCTCTGATCCCTATATGGG
LOC_Os03g10410
Os.6229.1.S1_at--715--3691Chr03:5283773..5283797 (25 bp)
CTATATGGGCCTTCTTTGTAGACAA
LOC_Os03g10410
Os.6229.1.S1_at--481--2511Chr03:5283809..5283833 (25 bp)
AACATTCCAGGATCTTGTGTGATGA
LOC_Os03g10410
Target Sequence 
GGCAATGATATACTTGTTTCCGCAAAGAAATCATCAGAAAGATCATTGGCTAGATTGGAAGCAAGAGAAGCTGCAGCGAA
GGCAGCAGCCAAGAGGGAAGAAGAAAGGGTGCGGGAACTGAAGAAGACTAGGGGAGAGAAATGGCTTCCTTCAATTGCTA
GACAAATGAAGGAAGAAAAAGCTTGGGAGCAACGGAAGTGATGATGCCACCATCATATCAATAGGGGTACCTGTGCTAAT
CTCTGATGCCATCATCGGCACTTCGGCAGTGACCTTCTTCACTTTCTGTCTATGACAAGGGACAGTAGATAGATCATAGA
TTAATGGATGATTTTGCGTAGCTGATAATTCAGTTCTGGATGTCAGCATTGCTCTGATCCCTATATGGGCCTTCTTTGTA
GACAATTTTGTATTGTAANNNNNNANNNTNNNNNGNNNNNAANNNAGNNNNNGNNNNCANNATTNNNNTNNNNNNNNNAN
NNGCNTTCTTTGTAGACAATTTTGTATTGTAACATTCCAGGATCTTGTGTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis