Browse Element(s) Details


Os.6266.1.S1_x_at

Description gb:AU166872
DB_XREF= gi:12405271
DB_XREF=AU166872
CLONE=C51684
TID=Os.6266.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1078G07.12 (B1078G07.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6681011/11hypothetical protein
LOC_Os02g454601/11Uncharacterized conserved protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66750OsAffx.2423.1.S1_at8/111+39094042..39095129hypothetical protein
LOC_Os01g66760Os.19617.1.S1_at11/111+39096975..39098643Leucine Rich Repeat family protein, expressed
LOC_Os01g66780NANA1+39104890..39105914hypothetical protein
LOC_Os01g66790NANA1+39106815..39112909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66800Os.46039.1.S1_at10/111+39114212..39115266hypothetical protein
LOC_Os01g66810Os.6266.1.S1_x_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66810Os.6266.1.S1_s_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66820OsAffx.21802.1.S1_at11/111+39122687..39123526receptor-like protein kinase, putative
LOC_Os01g66830Os.12623.1.S1_at1/111+39127805..39130757Pectinacetylesterase, putative, expressed
LOC_Os01g66840OsAffx.1083.1.S1_at10/111+39134404..39137366Pectinacetylesterase family protein, expressed
LOC_Os01g66850Os.12623.1.S1_at11/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66850OsAffx.21800.1.S1_at1/111+39138898..39142062Pectinacetylesterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6266.1.S1_x_at--790--4031Chr01:39117283..39117307 (25 bp)
CGTTACTGCCGTCGTTCCTCAAGAT
LOC_Os01g66810
Os.6266.1.S1_x_at--775--10471Chr01:39117285..39117309 (25 bp)
TTACTGCCGTCGTTCCTCAAGATCG
LOC_Os01g66810
Os.6266.1.S1_x_at--56--2211Chr01:39117348..39117432 (25 bp)
ACAAGTTGTCAGGAATATCTGAACA
LOC_Os01g66810
Os.6266.1.S1_x_at--843--8212Chr01:39117419..39117443 (25 bp)
GGAATATCTGAACAATCTCTGGAGA
LOC_Os01g66810
Os.6266.1.S1_x_at--945--9431Chr01:39117478..39117502 (25 bp)
TCGGCAACCTCCAGCTTAGCGGCAA
LOC_Os01g66810
Os.6266.1.S1_x_at--107--6731Chr01:39117527..39117551 (25 bp)
GTTCTTCCTGTCTCCTGATGGCGCG
LOC_Os01g66810
Os.6266.1.S1_x_at--100--10571Chr01:39117528..39117552 (25 bp)
TTCTTCCTGTCTCCTGATGGCGCGC
LOC_Os01g66810
Os.6266.1.S1_x_at--102--6691Chr01:39117580..39117604 (25 bp)
GTTCCGTGCCAGTGGCCGAGAAGAA
LOC_Os01g66810
Os.6266.1.S1_x_at--611--1411Chr01:39117607..39117631 (25 bp)
AGAAAAAGAAGCTGTCCGGCGCGGT
LOC_Os01g66810
Os.6266.1.S1_x_at--243--4151Chr01:39117626..39117650 (25 bp)
CGCGGTGGTCGCGACCATTGCCGTA
LOC_Os01g66810
Os.6266.1.S1_x_at--865--8351Chr01:39117662..39117686 (25 bp)
GGCGGCTCTACTGGCTCTGGTGCTA
LOC_Os01g66810
Target Sequence 
CGTTACTGCCGTCGTTCCTCAAGATCGACATCTTGCCCGAGGCTCTCCGCGGAAACATCGATCCAACAAGTTGTCAGGAA
TATCTGAACAATCTCTGGAGAAAAACAGAACAAGCAGTCCCGCCTGAGTCCTTCGTCGGCAACCTCCAGCTTAGCGGCAA
GCCTNTGAGCCGCCCATGCGAGCCGTTCTTCCTGTCTCCTGATGGCGCGCCGACGGATGGACGAGGCAGCGGAGGCGGTT
CCGTGCCAGTGGCCGAGAAGAAGAAGAAAAAGAAGCTGTCCGGCGCGGTGGTCGCGACCATTGCCGTAGGCGGCGGGATG
GCGGCTCTACTGGCTCTGGTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6266.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis