Browse Element(s) Details


Os.6294.1.S1_s_at

Description gb:AK101266.1
DB_XREF= gi:32986475
TID=Os.6294.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032L11, full insert sequence.
FL= gb:AK101266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0754011/11hemimethylated DNA binding domain containing protein, expressed
LOC_Os01g558802/11hemimethylated DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07500Os.49673.1.S1_at11/118+4205114..4206570uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os08g07510NANA8+4210715..4211149hypothetical protein
LOC_Os08g07520OsAffx.16878.1.S1_at11/118+4213705..4214067hypothetical protein
LOC_Os08g07530OsAffx.29082.1.S1_at10/118+4219844..4221250hypothetical protein
LOC_Os08g07540Os.6294.1.S1_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540Os.6294.1.S1_s_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540OsAffx.16132.1.S1_at1/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07550Os.5300.1.S1_at9/118+4236865..4237329hAT dimerisation domain-containing protein, putative
LOC_Os08g07560Os.47130.4.A1_x_at3/118+4241850..4246651retrotransposon protein, putative, unclassified
LOC_Os08g07570OsAffx.32166.1548.S1_s_at11/118+4248177..4249987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07580OsAffx.29083.1.S1_at11/118+4251270..4252139hypothetical protein
LOC_Os08g07590OsAffx.16879.1.S1_at9/118+4257539..4258633hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006289biological_processnucleotide-excision repair
GO:0003677molecular_functionDNA binding
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6294.1.S1_s_at--115--6452Chr08:4235585..4235609 (25 bp)
GATCAGCCACGTTATGAAGCTTCTG
LOC_Os08g07540
Os.6294.1.S1_s_at--239--5772Chr08:4235621..4235645 (25 bp)
GACGATGATGGCAGCACGGATAGCT
LOC_Os08g07540
Os.6294.1.S1_s_at--1079--10392Chr08:4235756..4235780 (25 bp)
TTTTGATGCCATTTCCGATGCCTTA
LOC_Os08g07540
Os.6294.1.S1_s_at--857--2152Chr08:4235842..4235866 (25 bp)
ACAGCGGGCTAATGTCAGTGAAGAC
LOC_Os08g07540
Os.6294.1.S1_s_at--725--1112Chr08:4235858..4235882 (25 bp)
AGTGAAGACTGGTGACTGGGCTAAC
LOC_Os08g07540
Os.6294.1.S1_s_at--642--5512Chr08:4235892..4235916 (25 bp)
GAACAATCCACAGCAATCTGCAATG
LOC_Os08g07540
Os.6294.1.S1_s_at--1073--9472Chr08:4235908..4235932 (25 bp)
TCTGCAATGAGGCAATCTGCATTTG
LOC_Os08g07540
Os.6294.1.S1_s_at--815--3852Chr08:4235945..4235969 (25 bp)
CTGACCTTGCAGATTCACGATTGAG
LOC_Os08g07540
Os.6294.1.S1_s_at--416--1092Chr08:4235984..4236008 (25 bp)
AGTGGCCAATCCATGAAGCCCTTTA
LOC_Os08g07540
Os.6294.1.S1_s_at--328--1232Chr08:4236061..4236085 (25 bp)
AGTTCTTCTGTAACTGTGTTCCCTC
LOC_Os08g07540
Os.6294.1.S1_s_at--606--2552Chr08:4236072..4236096 (25 bp)
AACTGTGTTCCCTCTGATGGGAATT
LOC_Os08g07540
Target Sequence 
GATCAGCCACGTTATGAAGCTTCTGGGGATGAAGATGACGATGATGGCAGCACGGATAGCTGAAAGGTAGGCAGCAAGAG
TTGTTTTGATGCCATTTCCGATGCCTTACCACCGACTGAGTTCCGAAATGGTGGAGGAGCTTGACAGCTTGTTACTATCT
GATGTAACTACAGCGGGCTAATGTCAGTGAAGACTGGTGACTGGGCTAACCTGGAACCTGAACAATCCACAGCAATCTGC
AATGAGGCAATCTGCATTTGATATATTGATATCTGACCTTGCAGATTCACGATTGAGGNATAACACCCATATAGTGGCCA
ATCCATGAAGCCCTTTACATATACGGTTCTAAAGAAGATCCTTGTGGATTTGCAGTCTGTACTTCCCCAAGTTCTTCTGT
AACTGTGTTCCCTCTGATGGGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6294.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis