Browse Element(s) Details


Os.6301.1.S1_at

Description gb:AK060210.1
DB_XREF= gi:32970228
TID=Os.6301.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) axi 1-like protein (P0408C03.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B05, full insert sequence.
FL= gb:AK060210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6239011/11Growth regulator protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62350Os.6823.1.S1_at11/111+36409967..3641250360S ribosomal protein L36-2, putative, expressed
LOC_Os01g62360Os.36319.1.S1_at11/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S1_x_at10/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S2_at5/111+36416028..36418407hypothetical protein
LOC_Os01g62370Os.10956.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62370Os.42477.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S1_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S2_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62390Os.6301.1.S1_at11/111+36432257..36434864Growth regulator protein, putative, expressed
LOC_Os01g62400Os.55656.1.S1_at9/111+36444018..36445236hypothetical protein
LOC_Os01g62410Os.38177.1.S1_at11/111+36449635..36455336Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g62420Os.12423.1.S1_at11/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62420Os.11197.2.S1_x_at1/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6301.1.S1_at--639--1431Chr01:36432794..36432818 (25 bp)
AGAACACTCTAAATCCATCCAGGCT
LOC_Os01g62390
Os.6301.1.S1_at--511--3631Chr01:36432752..36432776 (25 bp)
CTTGACTTGATTGACTGACCTTGAT
LOC_Os01g62390
Os.6301.1.S1_at--1020--10011Chr01:36432713..36432737 (25 bp)
TAGCATGTGCTCATTCTTTGCTTGC
LOC_Os01g62390
Os.6301.1.S1_at--471--7471Chr01:36432679..36432703 (25 bp)
GTGTGATGTCTGTCCGGTCTCCAAG
LOC_Os01g62390
Os.6301.1.S1_at--1126--5051Chr01:36432645..36432669 (25 bp)
GCAGCATTGCTCATCTATTACACTC
LOC_Os01g62390
Os.6301.1.S1_at--402--2231Chr01:36432562..36432586 (25 bp)
ACAATACACCGATCTGAGTCTCAAT
LOC_Os01g62390
Os.6301.1.S1_at--588--7431Chr01:36432533..36432557 (25 bp)
GTGTCTAACCGTTTCTAGGTCTAAT
LOC_Os01g62390
Os.6301.1.S1_at--1107--7271Chr01:36432494..36432518 (25 bp)
GTGCCAGTCCGCTTGATGTAATAGT
LOC_Os01g62390
Os.6301.1.S1_at--607--1191Chr01:36432472..36432496 (25 bp)
AGTAGTTCCCTTGTACATTTCTCAG
LOC_Os01g62390
Os.6301.1.S1_at--971--5551Chr01:36432369..36432393 (25 bp)
GAAAGCTAGCTCTTTGTCTAACTAT
LOC_Os01g62390
Os.6301.1.S1_at--784--10392Chr01:20518281..20518312 (25 bp)
TTTTCCTTCTTCTTTCATTTGTACA
NONE
Target Sequence 
AGAACACTCTAAATCCATCCAGGCTAGATAGCATCTACTAGTCTTGACTTGATTGACTGACCTTGATTCTTTTTGGTACC
ATAGCATGTGCTCATTCTTTGCTTGCCGTCTGGTGGTGTGATGTCTGTCCGGTCTCCAAGCACCCTACTGCAGCATTGCT
CATCTATTACACTCCCCAGGTGGATTTTGCGGATATATTAGATTCATATTAGCTAAGCTAATCCTGGGGCTAACAATACA
CCGATCTGAGTCTCAATAGATGTGTCTAACCGTTTCTAGGTCTAATACCCTGACAATGTAGTGCCAGTCCGCTTGATGTA
ATAGTAGTTCCCTTGTACATTTCTCAGCTAGGAAGAAATTTGTCATACAAANTTTGAGAAGAGGAACAATGCTTATTCTG
ATATAATTTATTGATCCTTTCATCTGAAAGCTAGCTCTTTGTCTAACTATTCTTTTGATTATTGTATCAAGGGAGGGAGG
TTTTCCTTCTTCTTTCATTTGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis