Browse Element(s) Details


Os.6318.1.S1_at

Description gb:AK108249.1
DB_XREF= gi:32993458
TID=Os.6318.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-H10, full insert sequence.
FL= gb:AK108249.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4502011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44970OsAffx.15106.2.S1_at11/115+26060098..26064315Protein kinase domain containing protein
LOC_Os05g44980Os.8468.1.S1_at1/115+26067505..26069239hypothetical protein
LOC_Os05g44990OsAffx.15107.1.S1_at11/115+26070126..26074441Protein kinase domain containing protein, expressed
LOC_Os05g45000OsAffx.15108.1.S1_at11/115+26076104..26077536Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g45010OsAffx.27313.1.S1_at11/115+26081562..26084201Leucine Rich Repeat family protein
LOC_Os05g45020Os.6318.1.S1_at11/115+26087886..26089136Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g45030Os.11098.1.S1_at11/115+26092355..26093838calcium homeostasis regulator CHoR1, putative, expressed
LOC_Os05g45040Os.52901.1.S1_at11/115+26094181..26096566F-box domain containing protein, expressed
LOC_Os05g45050Os.13565.1.A1_s_at11/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.8249.1.S1_at10/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.13565.1.A1_at1/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45060OsAffx.15109.1.S1_at11/115+26103373..26103996Zinc finger, C3HC4 type family protein
LOC_Os05g45070Os.55637.1.S1_at11/115+26106383..26107353Harpin-induced protein 1 containing protein, expressed
LOC_Os05g45080Os.52346.1.S1_at11/115+26109666..26111485UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45090NANA5+26113120..26114481UDP-glucoronosyl and UDP-glucosyl transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6318.1.S1_at--280--2791Chr05:26088399..26088423 (25 bp)
AAGAGTTGATGTTCGCAATGCGGGA
LOC_Os05g45020
Os.6318.1.S1_at--613--8271Chr05:26088347..26088371 (25 bp)
GGCATCGTCCGTAACGCCGGTGCTA
LOC_Os05g45020
Os.6318.1.S1_at--868--6931Chr05:26088266..26088290 (25 bp)
GTAGAAGCACCCGACAAGCTCAAAG
LOC_Os05g45020
Os.6318.1.S1_at--8--2711Chr05:26088251..26088275 (25 bp)
AAGCTCAAAGACATCATCTCTCTCG
LOC_Os05g45020
Os.6318.1.S1_at--144--3791Chr05:26088230..26088254 (25 bp)
CTCGGCGGCGACGATTAAGATGCAG
LOC_Os05g45020
Os.6318.1.S1_at--717--9771Chr05:26088177..26088201 (25 bp)
TAAGTTCACTTCAATTCGATGATCA
LOC_Os05g45020
Os.6318.1.S1_at--460--5131Chr05:26088148..26088172 (25 bp)
GCAAATTGCATCATTCTTCTGTACA
LOC_Os05g45020
Os.6318.1.S1_at--103--6771Chr05:26088105..26088129 (25 bp)
GTTAATCTGAACACAGCAATCCGTA
LOC_Os05g45020
Os.6318.1.S1_at--322--3051Chr05:26088089..26088113 (25 bp)
CAATCCGTAACTGTAAGTGTGGCGT
LOC_Os05g45020
Os.6318.1.S1_at--156--9791Chr05:26088076..26088100 (25 bp)
TAAGTGTGGCGTGCGTTTGCCTGCC
LOC_Os05g45020
Os.6318.1.S1_at--760--1491Chr05:26088021..26088045 (25 bp)
AGCACCCTTGCTTTTCGATTATTAT
LOC_Os05g45020
Target Sequence 
AAGAGTTGATGTTCGCAATGCGGGAGCTCGGCCTCCGGAAGGTGAGGCCGTCGGCATCGTCCGTAACGCCGGTGCTACCG
CCGGTGACGGACGAGGACGGGCCGGATTTCGGGTGGGTGTCCGAGCTTGTGATGTAGAAGCACCCGACAAGCTCAAAGAC
ATCATCTCTCTCGGCGGCGACGATTAAGATGCAGAGGCGCCTCGCAGAACAGCTTCATTAATTAAGTTCACTTCAATTCG
ATGATCATTTCGCAAATTGCATCATTCTTCTGTACATAAACAAATATGGTGCAAGTTAATCTGAACACAGCAATCCGTAA
CTGTAAGTGTGGCGTGCGTTTGCCTGCCTTTTTTTTTCGAAAATCTTGGGGAGCTAGTAGCACCCTTGCTTTTCGATTAT
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis