Browse Element(s) Details


Os.6353.1.S1_at

Description gb:AK069542.1
DB_XREF= gi:32979566
TID=Os.6353.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023023L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023L17, full insert sequence.
FL= gb:AK069542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0790011/11Clathrin assembly protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07840Os.1502.1.S1_at11/112+4109767..4112676bZIP transcription factor family protein, expressed
LOC_Os02g07850OsAffx.11932.1.S1_x_at10/112+4112945..4115853hypothetical protein
LOC_Os02g07860OsAffx.24156.1.S1_at11/112+4117565..4118962hypothetical protein
LOC_Os02g07860OsAffx.24156.2.S1_at1/112+4117565..4118962hypothetical protein
LOC_Os02g07870Os.47485.1.S1_at11/112+4120170..4127530Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os02g07880Os.9124.1.S1_at11/112+4129132..4133816expressed protein
LOC_Os02g07890Os.11533.1.S1_at11/112+4134900..4135625expressed protein
LOC_Os02g07900Os.6353.1.S1_at11/112+4135894..4140379Clathrin assembly protein, putative, expressed
LOC_Os02g07910OsAffx.2543.1.S1_at11/112+4141503..4142223fiber protein Fb15, putative, expressed
LOC_Os02g07920Os.47930.1.S1_at10/112+4144355..4147007expressed protein
LOC_Os02g07930OsAffx.24157.1.S1_s_at11/112+4149963..4151231B-box zinc finger family protein, expressed
LOC_Os02g07940NANA2+4157105..4158502retrotransposon protein, putative, unclassified
LOC_Os02g07950NANA2+4159538..4160221retrotransposon protein, putative, unclassified
LOC_Os02g07960Os.38295.1.S3_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S2_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S1_at10/112+4165204..4175209Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6353.1.S1_at--13--1891Chr02:4136418..4136442 (25 bp)
ACGATCCATTTGCTACGTCGAGCAG
LOC_Os02g07900
Os.6353.1.S1_at--931--4171Chr02:4136384..4136408 (25 bp)
CCCATCCAATGTCCAGTTTGCAATG
LOC_Os02g07900
Os.6353.1.S1_at--1074--5051Chr02:4136348..4136372 (25 bp)
GCAGCATCAGTACTACCAGTCTCAA
LOC_Os02g07900
Os.6353.1.S1_at--1104--2431Chr02:4136316..4136340 (25 bp)
AACAATACTACCAGCCTCATCATTT
LOC_Os02g07900
Os.6353.1.S1_at--241--9631Chr02:4136189..4136213 (25 bp)
TCAGGCTGGATCTTCCAATCCGTTT
LOC_Os02g07900
Os.6353.1.S1_at--1027--10611Chr02:4136155..4136179 (25 bp)
TTCGGTGACCTCGTACCAATGGCAA
LOC_Os02g07900
Os.6353.1.S1_at--88--3211Chr02:4136139..4136163 (25 bp)
CAATGGCAATGGCTGTCTCTCAAAA
LOC_Os02g07900
Os.6353.1.S1_at--83--10491Chr02:4136037..4136061 (25 bp)
TTAACTTAGTCACCTTCTCACTTGA
LOC_Os02g07900
Os.6353.1.S1_at--781--3251Chr02:4135992..4136016 (25 bp)
CAACTTGATCTTCTTCGTGCTAACT
LOC_Os02g07900
Os.6353.1.S1_at--581--711Chr02:4135959..4135983 (25 bp)
ATGATGCTGTATTTGCCATCTCGCT
LOC_Os02g07900
Os.6353.1.S1_at--696--4811Chr02:4135937..4135961 (25 bp)
GCTCTCTTGCAATATCCACATTTAC
LOC_Os02g07900
Target Sequence 
ACGATCCATTTGCTACGTCGAGCAGCTTCTTGCCCCCATCCAATGTCCAGTTTGCAATGCTGAACCAGCAGCAGCATCAG
TACTACCAGTCTCAACACCAGCAACAATACTACCAGCCTCATCATTTCCAGGATCATCAACATCACCATAACATGTATTT
TCAGACACATTATCAACAAAATCAGATATACCAACAACAGCAGCAGCAGCAGCATCAGTACCCTGCACCTCAGGCTGGAT
CTTCCAATCCGTTTGGTGACCCTTTCGGTGACCTCGTACCAATGGCAATGGCTGTCTCTCAAAAACATGGACATTCAAGT
TTGATATGAATTTGCCATATTCATGTTGTTAATGATCCCAGGCAATTTTAACATAGATGGGTTAACTTAGTCACCTTCTC
ACTTGACTTGAGTAGAGCATCTTGTACAACTTGATCTTCTTCGTGCTAACTTGAGAATTATGATGCTGTATTTGCCATCT
CGCTCTCTTGCAATATCCACATTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis