Browse Element(s) Details


Os.6377.1.S1_at

Description gb:AK099396.1
DB_XREF= gi:32984605
TID=Os.6377.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 6b-interacting protein 1 (P0485G01.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000M14, full insert sequence.
FL= gb:AK099396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4832010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48270Os.11627.1.S1_at11/111+27986863..27993594ATPase, AAA family protein, expressed
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48340OsAffx.23712.1.S1_at11/111+28031273..28031764hypothetical protein
LOC_Os01g48349NANA1+28038431..28039484NA
LOC_Os01g48360OsAffx.21509.1.S1_at11/111+28041472..28042089expressed protein
LOC_Os01g48370Os.22785.1.S1_a_at11/111+28043036..28048065Tub family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6377.1.S1_at--403--651Chr01:28017787..28017811 (25 bp)
ATGCAGGCTTTCGTGGACGTGCAGC
LOC_Os01g48320
Os.6377.1.S1_at--670--8531Chr01:28017774..28017798 (25 bp)
TGGACGTGCAGCTTCAGCTTGCAAA
LOC_Os01g48320
Os.6377.1.S1_at--522--2711Chr01:28017736..28017760 (25 bp)
AAGCATCCTGATGGTGCCACGGAGA
LOC_Os01g48320
Os.6377.1.S1_at--717--1931Chr01:28017718..28017742 (25 bp)
ACGGAGATGCTCATGTCTCTCGCCG
LOC_Os01g48320
Os.6377.1.S1_at--1008--3351Chr01:28017677..28017701 (25 bp)
CACCCCTGCTTACCTATGATAATTT
LOC_Os01g48320
Os.6377.1.S1_at--884--5731Chr01:28017599..28017623 (25 bp)
GACTGGTGGTCATATTAGGCCTGTA
LOC_Os01g48320
Os.6377.1.S1_at--346--8431Chr01:28017582..28017606 (25 bp)
GGCCTGTAGTGGATTTTTCATGCGA
LOC_Os01g48320
Os.6377.1.S1_at--875--6691Chr01:28017541..28017565 (25 bp)
GTTCCTTTATATTAAGCTGTCTCAG
LOC_Os01g48320
Os.6377.1.S1_at--126--8731Chr01:28017524..28017548 (25 bp)
TGTCTCAGATATTCCAGCGTGCTTA
LOC_Os01g48320
Os.6377.1.S1_at--3--3031Chr01:28017491..28017515 (25 bp)
AATGCCTGGTTGATATCTCCTCAGA
LOC_Os01g48320
Os.6377.1.S1_at--515--131NONE
ATTCAACTGTCAATTAGCTTTCTCC
NONE
Target Sequence 
ATGCAGGCTTTCGTGGACGTGCAGCTTCAGCTTGCAAAGGCAAAGCACGGGAAGCATCCTGATGGTGCCACGGAGATGCT
CATGTCTCTCGCCGCGCTCCCGTTCCTCAGCACCCCTGCTTACCTATGATAATTTAAGAACAAGAGTTTAGGTAAAGATT
TGTTTGGTCTCAGATTTATATTGTGGTGGACTGGTGGTCATATTAGGCCTGTAGTGGATTTTTCATGCGATTCCTATATG
NGTACTGTTCCTTTATATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGCAATGCCTGGTTGATATCTCCTCAG
ATTGGGAGGTTTACTAAGTTTGAAATTCAACTGTCAATTAGCTTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis