Browse Element(s) Details


Os.6444.1.S1_at

Description gb:AK111872.1
DB_XREF= gi:37988535
TID=Os.6444.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Ras-related protein Rab (OSJNBa0095C06.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040K07, full insert sequence.
FL= gb:AK111872.1 gb:AK104132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2310010/11Ras-related protein Rab11D, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23060OsAffx.20429.1.S1_at11/1110+11690388..11692922expressed protein
LOC_Os10g23060Os.16804.1.S1_at10/1110+11690388..11692922expressed protein
LOC_Os10g23080OsAffx.20428.1.S1_at11/1110+11697291..11699819hypothetical protein
LOC_Os10g23090Os.8598.1.S1_s_at11/1110+11710269..11711707Homeobox domain containing protein, expressed
LOC_Os10g23100Os.6444.1.S1_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23100Os.6444.2.S1_x_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23110OsAffx.16381.1.S1_x_at11/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.2.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.3.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.27522.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.4.A1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16187.1.S1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23120Os.16785.1.S1_at11/1110+11736406..11742276pyridoxamine 5'-phosphate oxidase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6444.1.S1_at--92--5031Chr10:11717067..11717091 (25 bp)
GCAGTTCCATGTGATCTTACTCTAC
LOC_Os10g23100
Os.6444.1.S1_at--184--3671Chr10:11717052..11717076 (25 bp)
CTTACTCTACTCAGATTCAGCTGTA
LOC_Os10g23100
Os.6444.1.S1_at--319--8911Chr10:11717011..11717035 (25 bp)
TGAGAATTTTCACGCGATCTTTCTG
LOC_Os10g23100
Os.6444.1.S1_at--245--7031Chr10:11716983..11717007 (25 bp)
GTACATCCCTGCTCAAATAGCTCTA
LOC_Os10g23100
Os.6444.1.S1_at--345--3091Chr10:11716968..11716992 (25 bp)
AATAGCTCTAGGCTGCGAGTATTGT
LOC_Os10g23100
Os.6444.1.S1_at--1135--2031Chr10:11716940..11716964 (25 bp)
ACTATTGGTTGTTTCGGTGATCAGG
LOC_Os10g23100
Os.6444.1.S1_at--640--10811Chr10:11716885..11716909 (25 bp)
TTGTCACTTCTCTCAGCTGGAGTAG
LOC_Os10g23100
Os.6444.1.S1_at--62--5051Chr10:11716853..11716877 (25 bp)
GCAGAGGAGCTCTATTTTTCATAGG
LOC_Os10g23100
Os.6444.1.S1_at--196--10471Chr10:11716804..11716828 (25 bp)
TTACCAATAGCCATGTATGCCGATT
LOC_Os10g23100
Os.6444.1.S1_at--380--6911Chr10:11716790..11716814 (25 bp)
GTATGCCGATTGTTTTACATTTCTT
LOC_Os10g23100
Os.6444.1.S1_at--888--4011NONE
CGTACTAACGTGTGGCATTGCCTTA
NONE
Target Sequence 
GCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCT
GGANGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGG
ATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGA
GTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGT
TACACGTATTACTATTAATNTNTNNNNNNNNNNNTATGACACCGTACTAACGTGTGGCATTGCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis