Browse Element(s) Details


Os.6444.2.S1_x_at

Description gb:NM_196164.1
DB_XREF= gi:37533687
TID=Os.6444.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6444 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Ras-related protein Rab (OSJNBa0095C06.15), mRNA.
PROD=putative Ras-related protein Rab
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2310010/11Ras-related protein Rab11D, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23060OsAffx.20429.1.S1_at11/1110+11690388..11692922expressed protein
LOC_Os10g23060Os.16804.1.S1_at10/1110+11690388..11692922expressed protein
LOC_Os10g23080OsAffx.20428.1.S1_at11/1110+11697291..11699819hypothetical protein
LOC_Os10g23090Os.8598.1.S1_s_at11/1110+11710269..11711707Homeobox domain containing protein, expressed
LOC_Os10g23100Os.6444.1.S1_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23100Os.6444.2.S1_x_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23110OsAffx.16381.1.S1_x_at11/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.2.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.3.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.27522.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.4.A1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16187.1.S1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23120Os.16785.1.S1_at11/1110+11736406..11742276pyridoxamine 5'-phosphate oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6444.2.S1_x_at--726--9611NONE
TCATCGACCACAAGTATAGAGCTGT
NONE
Os.6444.2.S1_x_at--653--1371Chr10:11717488..11717512 (25 bp)
AGAGCTGTCACGAGTGCATACTACA
LOC_Os10g23100
Os.6444.2.S1_x_at--1133--5911Chr10:11717460..11717484 (25 bp)
GAGCATTGGGAGCTCTCCTAGTCTA
LOC_Os10g23100
Os.6444.2.S1_x_at--984--9491Chr10:11717447..11717471 (25 bp)
TCTCCTAGTCTACGATATCACCAAG
LOC_Os10g23100
Os.6444.2.S1_x_at--737--2671Chr10:11717425..11717449 (25 bp)
AAGCGCCAGAGCTTTGATCACATCC
LOC_Os10g23100
Os.6444.2.S1_x_at--842--9691Chr10:11717408..11717432 (25 bp)
TCACATCCCTCGCTGGCTGGAGGAG
LOC_Os10g23100
Os.6444.2.S1_x_at--300--1591Chr10:11717385..11717409 (25 bp)
AGCTCCGTGGCCATGCGGACAAGAA
LOC_Os10g23100
Os.6444.2.S1_x_at--737--5931Chr10:11717306..11717330 (25 bp)
GAGCACCGAGGATGCCAAGGAGTTT
LOC_Os10g23100
Os.6444.2.S1_x_at--75--10691Chr10:11717215..11717239 (25 bp)
TTCCAGACCGTCCTGTCAGAGATAT
LOC_Os10g23100
Os.6444.2.S1_x_at--881--5371Chr10:11717174..11717198 (25 bp)
GAAGAACATGGCAGCGGACCCAAAA
LOC_Os10g23100
Os.6444.2.S1_x_at--91--3831Chr10:11717139..11717163 (25 bp)
CTGCCCCATCGCTAGCAGGGAAGAA
LOC_Os10g23100
Target Sequence 
TCATCGACCACAAGTATAGAGCTGTCACGAGTGCATACTACAGAGGAGCATTGGGAGCTCTCCTAGTCTACGATATCACC
AAGCGCCAGAGCTTTGATCACATCCCTCGCTGGCTGGAGGAGCTCCGTGGCCATGCGGACAAGAACATAGTCATCATGCT
GGTTGGCAACAAGAGCGATCTTGAAGACGAGCGGGCCGTGAGCACCGAGGATGCCAAGGAGTTTGCTGAGAAGGAGAACC
TCTTCTTCCTGGAGACCTCCGCTCTGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAA
ATTCACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6444.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis