Browse Element(s) Details


Os.6544.2.S1_at

Description gb:AK120644.1
DB_XREF= gi:37990267
TID=Os.6544.2
CNT=60
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.6544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155B15, full insert sequence.
FL= gb:AK120644.1 gb:AK104474.1 gb:AK060857.1 gb:AK098882.1 gb:AK105442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5543011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55390Os.46185.1.S1_x_at3/112+33922540..3392289260S ribosomal protein L39, putative
LOC_Os02g55390Os.11168.1.S1_x_at1/112+33922540..3392289260S ribosomal protein L39, putative
LOC_Os02g55400Os.50459.1.S1_at10/112+33925949..33930287ATPase 8, plasma membrane-type, putative, expressed
LOC_Os02g55400OsAffx.5813.1.S1_x_at1/112+33925949..33930287ATPase 8, plasma membrane-type, putative, expressed
LOC_Os02g55410Os.48072.1.S1_at10/112+33930357..33934637DNA replication licensing factor MCM5, putative, expressed
LOC_Os02g55420Os.18547.1.S1_at11/112+33936155..33940525Aspartate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g55430Os.6544.2.S1_at11/112+33947411..33949182expressed protein
LOC_Os02g55440Os.11857.1.S1_at11/112+33951290..33953880Endomembrane protein 70 containing protein, expressed
LOC_Os02g55450NANA2+33957915..33958169hypothetical protein
LOC_Os02g55460OsAffx.3079.1.S1_at11/112+33960452..33963689expressed protein
LOC_Os02g55460Os.24273.1.A1_at10/112+33960452..33963689expressed protein
LOC_Os02g55470Os.23470.1.S1_at11/112+33965501..33967669N-acetylglucosaminyltransferase II family protein, expressed
LOC_Os02g55480Os.18565.1.S1_at11/112+33969953..33972499Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55489NANA2+33973889..33974186NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6544.2.S1_at--1096--6691Chr02:33948385..33948409 (25 bp)
GTTCCGATCAAACTCTCCCGGTATT
LOC_Os02g55430
Os.6544.2.S1_at--199--9491Chr02:33948398..33948422 (25 bp)
TCTCCCGGTATTTTTTCAGAGGACG
LOC_Os02g55430
Os.6544.2.S1_at--69--1851Chr02:33948434..33948458 (25 bp)
ACGCATCTGCCGGTGGTTGGATTTG
LOC_Os02g55430
Os.6544.2.S1_at--638--7911Chr02:33948531..33948555 (25 bp)
GGTTGATTAGTTCTTTGTCTTTTGA
LOC_Os02g55430
Os.6544.2.S1_at--181--191Chr02:33948611..33948635 (25 bp)
ATTTAGGCTGGCTTGGTGTTGCTGA
LOC_Os02g55430
Os.6544.2.S1_at--676--3611Chr02:33948622..33948646 (25 bp)
CTTGGTGTTGCTGATCTGTTAGTAC
LOC_Os02g55430
Os.6544.2.S1_at--1059--6771Chr02:33948769..33948793 (25 bp)
GTTAGGTATTATGTCCAGTGTCAAA
LOC_Os02g55430
Os.6544.2.S1_at--328--7431Chr02:33948840..33948864 (25 bp)
GTGTTATCTTTCTGTTCGTCTGTAA
LOC_Os02g55430
Os.6544.2.S1_at--261--2531Chr02:33948897..33948921 (25 bp)
AACTATGTATCAGATCCTCGCAGTG
LOC_Os02g55430
Os.6544.2.S1_at--554--6371Chr02:33948909..33948933 (25 bp)
GATCCTCGCAGTGGTGAATTTCATT
LOC_Os02g55430
Os.6544.2.S1_at--1018--5211Chr02:33948924..33948948 (25 bp)
GAATTTCATTCAACACATCAGTGGA
LOC_Os02g55430
Target Sequence 
GTTCCGATCAAACTCTCCCGGTATTTTTTCAGAGGACGAGTTTGGGGGAACGCATCTGCCGGTGGTTGGATTTGGTAGTG
GTTAGGTTTTCAAAAGTTTCGTGGTGGAATTATGTTGGGGGTTTGCTTCTACGAAGAACAACACTAGGTTGATTAGTTCT
TTGTCTTTTGAGTTTGGTTTTTAGGTGGTGTCTTGGTTGGGAAAAATTGGGGTTAGTTTGGTGGAAATTTAGGCTGGCTT
GGTGTTGCTGATCTGTTAGTACAGCAGTAGTGGTAATAATAGTAGAGGTTTGGTTAGATGAATAATTCGTCGGTAGTGAT
TGTGATTTGTGGTTTGGTGAGCGTGAGTTCAATGTCAGGTGAAGAATAGTAGCACTAAATTCGTGTTAGGTATTATGTCC
AGTGTCAAAGGCAAGACATATATAGTTCTTATTATCAGTAATTAAGTTATGTTAGGTGTTATCTTTCTGTTCGTCTGTAA
GATATATATAGATCTTATCGGGTAATCAAATCAACTATGTATCAGATCCTCGCAGTGGTGAATTTCATTCAACACATCAG
TGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6544.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis