Browse Element(s) Details


Os.6591.1.S1_at

Description gb:AK120999.1
DB_XREF= gi:37990622
TID=Os.6591.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044J18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044J18, full insert sequence.
FL= gb:AK120999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5551011/11hypothetical protein
LOC_Os02g5550011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55450NANA2+33957915..33958169hypothetical protein
LOC_Os02g55460OsAffx.3079.1.S1_at11/112+33960452..33963689expressed protein
LOC_Os02g55460Os.24273.1.A1_at10/112+33960452..33963689expressed protein
LOC_Os02g55470Os.23470.1.S1_at11/112+33965501..33967669N-acetylglucosaminyltransferase II family protein, expressed
LOC_Os02g55480Os.18565.1.S1_at11/112+33969953..33972499Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55489NANA2+33973889..33974186NA
LOC_Os02g55500Os.6591.1.S1_at11/112+33977061..33977762expressed protein
LOC_Os02g55510Os.6591.1.S1_at11/112+33980599..33981803hypothetical protein
LOC_Os02g55520Os.18962.1.S1_at9/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55520Os.9329.1.S1_at6/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55530Os.24368.1.S1_at11/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55530OsAffx.27328.1.S1_at1/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55540OsAffx.24885.1.S1_at11/112+34002376..34004220F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6591.1.S1_at--709--5852Chr02:33981600..33981624 (25 bp)
GACCAAGTCTATATTTGAGGCCCAT
LOC_Os02g55510
Os.6591.1.S1_at--70--6172Chr02:33981503..33981527 (25 bp)
GAGGATCCCGCCACAAGCAAGAAGT
LOC_Os02g55510
Os.6591.1.S1_at--346--8012Chr02:33981450..33981474 (25 bp)
GGAGGCCGAGGTATTCCTTGATAAA
LOC_Os02g55510
Os.6591.1.S1_at--192--2853Chr02:33981427..33981451 (25 bp)
AAGTCGTCGCTTATATTCAAACAAC
LOC_Os02g55510
Os.6591.1.S1_at--260--233Chr02:33981387..33981411 (25 bp)
ATATTATGTAGTACCTCCCCATCTG
LOC_Os02g55510
Os.6591.1.S1_at--1055--472Chr02:33981367..33981391 (25 bp)
ATCTGTTCCTTCATCATGACCGAGC
LOC_Os02g55510
Os.6591.1.S1_at--218--672Chr02:33981352..33981376 (25 bp)
ATGACCGAGCGACGACATTATTAAT
LOC_Os02g55510
Os.6591.1.S1_at--952--10392Chr02:33981335..33981359 (25 bp)
TTATTAATGGTTCTCACCCAACGGC
LOC_Os02g55510
Os.6591.1.S1_at--143--3392Chr02:33981310..33981334 (25 bp)
CAGCCCTGCATTACATTGTCATGTT
LOC_Os02g55510
Os.6591.1.S1_at--181--3612Chr02:33981297..33981321 (25 bp)
CATTGTCATGTTTATTCCTTTTACC
LOC_Os02g55510
Os.6591.1.S1_at--504--8572Chr02:33981222..33981246 (25 bp)
TGGTATGTCGTTCTTCCCAATATTA
LOC_Os02g55510
Target Sequence 
GACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGT
GTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAG
GTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGCATGATTATATTATGTAGTACCTCCCCATCTGTT
CCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTC
CTTTTACCTTTTAAGTTGTTTCCTTTTGTTGAAGTTTATAACTTCCGAGTGATTGATTTGGTATGTCGTTCTTCCCAATA
TTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis