Browse Element(s) Details


Os.6647.1.S1_a_at

Description gb:AK068764.1
DB_XREF= gi:32978789
TID=Os.6647.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23523 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162A14, full insert sequence.
FL= gb:AK068764.1 gb:AK109429.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2460011/11Peptide methionine sulfoxide reductase msrB, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24540OsAffx.13004.1.S1_at9/113+13965574..13968922expressed protein
LOC_Os03g24550NANA3+13971172..13972613hypothetical protein
LOC_Os03g24560Os.56938.1.S1_at11/113+13974644..13975479expressed protein
LOC_Os03g24580Os.8894.1.S1_at10/113+13979319..13982817expressed protein
LOC_Os03g24590OsAffx.3309.1.S1_s_at11/113+13985064..13986149mTERF family protein, expressed
LOC_Os03g24600Os.6647.1.S1_a_at11/113+13988999..13992663Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os03g24610OsAffx.3310.1.S1_at11/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.20484.1.S1_x_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.32313.1.S1_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.20484.1.S1_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.32313.1.S1_x_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24620OsAffx.22636.1.S1_at2/113+13998332..14003133retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g24630Os.41695.3.S1_x_at9/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.5.S1_x_at9/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.15.S1_s_at8/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.2.S1_x_at7/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.4.S1_x_at1/113+14005652..14008054hypothetical protein
LOC_Os03g24640OsAffx.13006.1.S1_at11/113+14011320..14016134Terpene synthase family, metal binding domain containing protein
LOC_Os03g24640OsAffx.32219.1.A1_x_at11/113+14011320..14016134Terpene synthase family, metal binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6647.1.S1_a_at--180--1211Chr03:13992159..13992183 (25 bp)
AGTTTGATTCTGGTTGTGGCTGGCC
LOC_Os03g24600
Os.6647.1.S1_a_at--807--10351Chr03:13992189..13992213 (25 bp)
TTTTTGAGGGACTTCCTGGAGCCAT
LOC_Os03g24600
Os.6647.1.S1_a_at--748--1791Chr03:13992216..13992326 (25 bp)
ACCGAACACCGGATCCTGATGGAAG
LOC_Os03g24600
Os.6647.1.S1_a_at--875--5571Chr03:13992334..13992358 (25 bp)
GAAATCACGTGTGCAGCTTGCGGTG
LOC_Os03g24600
Os.6647.1.S1_a_at--86--7491Chr03:13992356..13992380 (25 bp)
GTGGGCATTTGGGTCACGTGTTCAA
LOC_Os03g24600
Os.6647.1.S1_a_at--686--5291Chr03:13992385..13992409 (25 bp)
GAAGGCTTCAAGACGCCTACTGATG
LOC_Os03g24600
Os.6647.1.S1_a_at--60--9931Chr03:13992402..13992426 (25 bp)
TACTGATGAGCGTCACTGTGTGAAC
LOC_Os03g24600
Os.6647.1.S1_a_at--762--1091Chr03:13992427..13992451 (25 bp)
AGTGTTTCGATCAAGTTCACCCCGG
LOC_Os03g24600
Os.6647.1.S1_a_at--598--4111Chr03:13992455..13992479 (25 bp)
CCTAAATCCTTTCCCAGGTCATTAT
LOC_Os03g24600
Os.6647.1.S1_a_at--176--31Chr03:13992481..13992505 (25 bp)
ATTGGAGGTGAATTCCCCAGGGCTA
LOC_Os03g24600
Os.6647.1.S1_a_at--65--131Chr03:13992574..13992598 (25 bp)
ATTCATCTCCTGTTAATTTAGCTGT
LOC_Os03g24600
Target Sequence 
AGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACACCGGATCCTGATGGA
AGGAGGGTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTAC
TGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTG
GAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAAGCACTACAAAATAATGAATAAAATCACAGAGACATATCCTGTTTGTC
CATATATGAATTCATCTCCTGTTAATTTAGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6647.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis