Browse Element(s) Details


Os.6728.1.S1_at

Description gb:AK099754.1
DB_XREF= gi:32984963
TID=Os.6728.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6728 (NCBI UniGene Cluster)
UG_TITLE=MRNA for SAR DNA binding protein, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092O17, full insert sequence.
FL= gb:AK099754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2273011/11Nucleolar protein NOP5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22690Os.11847.1.S1_at11/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22690Os.32544.1.S1_at1/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22700Os.53969.1.S1_at11/113+13089745..13094569Protein kinase domain containing protein, expressed
LOC_Os03g22720Os.10709.1.S1_at11/113+13101461..13103329expressed protein
LOC_Os03g22730Os.6728.1.S1_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.1.S1_a_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.2.S1_x_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.10111.1.S1_at11/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.6728.2.S1_x_at4/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22750OsAffx.3299.1.S1_at11/113+13119521..13120781F-box domain containing protein
LOC_Os03g22750Os.15941.2.S1_x_at1/113+13119521..13120781F-box domain containing protein
LOC_Os03g22760OsAffx.25194.1.S1_at11/113+13127681..13127941hypothetical protein
LOC_Os03g22770Os.3395.1.S1_at11/113+13131820..13134377CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6728.1.S1_at--375--3071Chr03:13105239..13105263 (25 bp)
AATCTTGGGTAGCATTGGGTTGAAA
LOC_Os03g22730
Os.6728.1.S1_at--498--8631Chr03:13105224..13105248 (25 bp)
TGGGTTGAAAACTCGCTGTTCTGTA
LOC_Os03g22730
Os.6728.1.S1_at--513--7031Chr03:13105202..13105226 (25 bp)
GTAAAATGGAACATGCCGGGTCTGT
LOC_Os03g22730
Os.6728.1.S1_at--609--9231Chr03:13105177..13105201 (25 bp)
TCCATGCCTGTTAGCCATAGTATAG
LOC_Os03g22730
Os.6728.1.S1_at--261--1691Chr03:13105165..13105189 (25 bp)
AGCCATAGTATAGGCACCACTGTTG
LOC_Os03g22730
Os.6728.1.S1_at--740--8251Chr03:13105153..13105177 (25 bp)
GGCACCACTGTTGAGACTTGAGACT
LOC_Os03g22730
Os.6728.1.S1_at--121--5991Chr03:13105134..13105158 (25 bp)
GAGACTTGTTTACTAGTGGAACTGT
LOC_Os03g22730
Os.6728.1.S1_at--392--7531Chr03:13105119..13105143 (25 bp)
GTGGAACTGTATTGAAGCACCTAGT
LOC_Os03g22730
Os.6728.1.S1_at--856--251Chr03:13105078..13105102 (25 bp)
ATAGGGAAACATGTCGTGCTTGCTC
LOC_Os03g22730
Os.6728.1.S1_at--1131--9411Chr03:13105065..13105089 (25 bp)
TCGTGCTTGCTCGTTCTATGTGAAC
LOC_Os03g22730
Os.6728.1.S1_at--818--10711Chr03:13104994..13105018 (25 bp)
TTGCAATGGCTGTTAAGGTCTTTCA
LOC_Os03g22730
Target Sequence 
AATCTTGGGTAGCATTGGGTTGAAAACTCGCTGTTCTGTAAAATGGAACATGCCGGGTCTGTTCCATGCCTGTTAGCCAT
AGTATAGGCACCACTGTTGAGACTTGAGACTTGTTTACTAGTGGAACTGTATTGAAGCACCTAGTAGTACTAAATTTTGG
AATAGGGAAACATGTCGTGCTTGCTCGTTCTATGTGAACTGAAATTTTTGGTCCTTTTGGCCGGGAGGGTCTTGTTCGTG
CAATATTGCAATGGCTGTTAAGGTCTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis