Browse Element(s) Details


Os.6764.1.S1_at

Description gb:AU096803
DB_XREF= gi:8859485
DB_XREF=AU096803
CLONE=S15771
TID=Os.6764.1
CNT=34
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6764 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_192765.1 (A.thaliana) probable wound-induced protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g543109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54260NANA4+32088752..32094910transposon protein, putative, unclassified
LOC_Os04g54270NANA4+32095550..32098786transposon protein, putative, unclassified
LOC_Os04g54280Os.27639.1.S1_x_at8/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.53731.1.S1_at3/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.9913.1.S1_at2/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54300Os.6764.2.S1_at10/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54300Os.7705.1.S1_at9/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54310OsAffx.14412.1.S1_at11/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.6764.1.S1_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_x_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_at8/114+32117280..32118805hypothetical protein
LOC_Os04g54320Os.7707.1.S1_at11/114+32119350..32120467expressed protein
LOC_Os04g54330Os.10971.1.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.1.S1_a_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.2.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340Os.53037.1.S1_at11/114+32123528..32129355Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350Os.4845.1.S1_at8/114+32129344..32132785SPRY domain containing protein, expressed
LOC_Os04g54360Os.5910.1.S1_at11/114+32134421..32136977Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370Os.54152.1.S1_at7/114+32137092..32139691expressed protein
LOC_Os04g54380Os.57400.1.S1_at11/114+32140701..32143586aluminum resistance protein homolog, putative

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6764.1.S1_at--395--1331Chr04:32118809..32118833 (25 bp)
AGAGGAGATCATCGGATCAATCTCA
NONE
Os.6764.1.S1_at--685--491Chr04:32118799..32118823 (25 bp)
ATCGGATCAATCTCATCAATGGCGG
NONE
Os.6764.1.S1_at--772--4771Chr04:32118540..32118564 (25 bp)
GCTGCTGGAGTACTAATTAGTGTAT
LOC_Os04g54310
Os.6764.1.S1_at--736--6971Chr04:32118531..32118555 (25 bp)
GTACTAATTAGTGTATAAACTCGAG
LOC_Os04g54310
Os.6764.1.S1_at--379--2551Chr04:32118514..32118538 (25 bp)
AACTCGAGATACTAGTACGTAGCTA
LOC_Os04g54310
Os.6764.1.S1_at--113--9891Chr04:32118505..32118529 (25 bp)
TACTAGTACGTAGCTAGAGCTGAAG
LOC_Os04g54310
Os.6764.1.S1_at--438--5891Chr04:32118489..32118513 (25 bp)
GAGCTGAAGTAGCAAACCATGGCTT
LOC_Os04g54310
Os.6764.1.S1_at--458--1191Chr04:32118482..32118506 (25 bp)
AGTAGCAAACCATGGCTTGAGATTT
LOC_Os04g54310
Os.6764.1.S1_at--95--2651Chr04:32118475..32118499 (25 bp)
AACCATGGCTTGAGATTTGGCCGGT
LOC_Os04g54310
Os.6764.1.S1_at--163--8491Chr04:32118470..32118494 (25 bp)
TGGCTTGAGATTTGGCCGGTTGCTT
LOC_Os04g54310
Os.6764.1.S1_at--1015--4191Chr04:32118390..32118414 (25 bp)
CCCGTGGTTTTTTTGCCATGTGAAT
LOC_Os04g54310
Target Sequence 
AGAGGAGATCATCGGATCAATCTCATCAATGGCGGGTGCAGCGAAGGCGTCGTGGATGGTGGCGATGAGCGTGGGCGCCG
TGGAGGCGNTCAAGGACCAGGGCGGACTCTGCCGCTGGAACTACGCGCTGCGGTCCATCCACAAGGCAGCCAAGGCCAAC
GCCGCCGGNNNTCTCGCAGGGCAAGAAGCTGCCTGCCTCCGCGGCGGCGGTGGCGGAGAGGAGGAGAGCGGAGAAGGCCG
AGGAGGGGTTGAGGACGGTCATGTACATCAGCTGCTGGAGTACTAATTAGTGTATAAACTCGAGATACTAGTACGTAGCT
AGAGCTGAAGTAGCAAACCATGGCTTGAGATTTGGCCGGTTGCTTCCTTGATGTGTATATATATCAAGATGATGATGAAA
ATTTCTTNGTTACTAAATTGCCCCGTGGTTTTTTTGCCATGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis