Browse Element(s) Details


Os.6774.1.S1_at

Description gb:AK100117.1
DB_XREF= gi:32985326
TID=Os.6774.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007E18, full insert sequence.
FL= gb:AK100117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2245011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22420OsAffx.17849.1.S1_at11/119+13536731..13537689hypothetical protein
LOC_Os09g22420OsAffx.6361.1.S1_at2/119+13536731..13537689hypothetical protein
LOC_Os09g22430OsAffx.6366.1.S1_at11/119+13538170..13539189hypothetical protein
LOC_Os09g22440Os.9979.1.S1_at11/119+13552672..13557088expressed protein
LOC_Os09g22450Os.6774.1.S1_at11/119+13558547..13562069Lipase family protein, expressed
LOC_Os09g22460OsAffx.29976.1.S1_at11/119+13562564..13563715F-box domain containing protein
LOC_Os09g22470OsAffx.17850.1.S1_at11/119+13564643..13565788hypothetical protein
LOC_Os09g22480NANA9+13566936..13567319hypothetical protein
LOC_Os09g22490NANA9+13568371..13568598hypothetical protein
LOC_Os09g22500Os.27389.2.S1_a_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_s_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_at5/119+13570645..13575072hypothetical protein
LOC_Os09g22500Os.52345.1.S1_at1/119+13570645..13575072hypothetical protein
LOC_Os09g22510Os.8846.1.S1_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.12988.1.S1_x_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.4565.1.S1_at1/119+13577168..13580613hypothetical protein
LOC_Os09g22520OsAffx.17849.1.S1_at1/119+13582619..13583644hypothetical protein
LOC_Os09g22530OsAffx.6368.1.S1_at10/119+13584768..13585925expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0006952biological_processdefense response
GO:0007568biological_processaging
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6774.1.S1_at--1078--5231Chr09:13561470..13561494 (25 bp)
GAATCTAGGAACCTTGTACCGCCGG
LOC_Os09g22450
Os.6774.1.S1_at--1142--4251Chr09:13561491..13561515 (25 bp)
CCGGTTGGTTGAGCCCTTAGACATT
LOC_Os09g22450
Os.6774.1.S1_at--488--1691Chr09:13561639..13561663 (25 bp)
AGCCTTGAGTCTTGCTTCTGGGCAA
LOC_Os09g22450
Os.6774.1.S1_at--402--3811Chr09:13561675..13561699 (25 bp)
CTCCAGGCTGAGATTGCTAACGGCA
LOC_Os09g22450
Os.6774.1.S1_at--552--7391Chr09:13561742..13561766 (25 bp)
GTGATGCTCACGGATGGTCCATGTC
LOC_Os09g22450
Os.6774.1.S1_at--523--231Chr09:13561784..13561808 (25 bp)
ATATATTCCTGAGCCGTTCTTCTTT
LOC_Os09g22450
Os.6774.1.S1_at--717--211Chr09:13561813..13561837 (25 bp)
ATTTGGTGGAAGACGCTCCCGGAGA
LOC_Os09g22450
Os.6774.1.S1_at--107--3551Chr09:13561857..13561881 (25 bp)
CATCGCGAAACTTGTGCCCTGGTAA
LOC_Os09g22450
Os.6774.1.S1_at--92--8271Chr09:13561930..13561954 (25 bp)
GGCAGGCATTCGTGGCATGTTGCAA
LOC_Os09g22450
Os.6774.1.S1_at--914--9012Chr09:13561950..13561974 (25 bp)
TGCAACTACTGCCACTGTAACTGTA
LOC_Os09g22450
Os.6774.1.S1_at--1000--9871Chr09:13562004..13562028 (25 bp)
TACTTCGCGTTTTTGTATCCTACAC
LOC_Os09g22450
Target Sequence 
GAATCTAGGAACCTTGTACCGCCGGTTGGTTGAGCCCTTAGACATTGCAAACTACTATAGGCATTCCAAGAACGAGGACA
CTGGCTCCTACCTCTCCAAGGGAAGGCCAAGACGTTACAAGTNACACCCAGGAGTGGCACGAGCAGTCGCAGCGCATCTC
CTTCGGTTCTAGCCTTGAGTCTTGCTTCTGGGCAATGGCTGAGGAACTCCAGGCTGAGATTGCTAACGGCAAAACATTCG
ANGATGTGAGAGATAGAGTAGTTAAGCTTGAGAGTGATGCTCACGGATGGTCCATGTCTGGAAGTTTAGGGAAGGATATA
TTCCTGAGCCGTTCTTCTTTTGTGATTTGGTGGAAGACGCTCCCGGAGAACCACAGATCTGCATCATGCATCGCGAAACT
TGTGCCCTGGTAAGGAAGCTTTACATTATATGGATAGAATTATTTGCCTTCACAATGATGAGGCAGGCATTCGTGGCATG
TTGCAACTACTGCCACTGTAACTGTATACCATATGCATGAACTTTGTAAATATGCTACTTCGCGTTTTTGTATCCTACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis