Browse Element(s) Details


Os.6794.1.S1_at

Description gb:AK100564.1
DB_XREF= gi:32985773
TID=Os.6794.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104J05, full insert sequence.
FL= gb:AK100564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2780011/11Paramyosin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27770Os.22477.1.S1_at10/113+15902760..15906196heme oxygenase 2, putative, expressed
LOC_Os03g27780OsAffx.3349.1.S1_s_at11/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27780OsAffx.3349.1.S1_at10/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27790OsAffx.13083.1.S1_at11/113+15915809..15916382EF hand family protein
LOC_Os03g27800Os.6794.1.S1_at11/113+15917898..15922104Paramyosin, putative, expressed
LOC_Os03g27810NANA3+15928756..15929655hypothetical protein
LOC_Os03g27820OsAffx.25259.1.S1_s_at11/113+15939931..15945353expressed protein
LOC_Os03g27820Os.19566.1.S1_at11/113+15939931..15945353expressed protein
LOC_Os03g27830Os.50274.1.S2_at11/113+15945772..15948565expressed protein
LOC_Os03g27830Os.50274.1.S1_a_at11/113+15945772..15948565expressed protein
LOC_Os03g27830OsAffx.3350.1.S1_s_at11/113+15945772..15948565expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6794.1.S1_at--641--1511Chr03:15918416..15918440 (25 bp)
AGCAGAGCTTGAGCAGCGTCGGAAA
LOC_Os03g27800
Os.6794.1.S1_at--344--731Chr03:15918381..15918405 (25 bp)
ATGTTGCTAATCCTTGGACTGCTCC
LOC_Os03g27800
Os.6794.1.S1_at--63--9111Chr03:15918362..15918386 (25 bp)
TGCTCCACCTATAAGATCACCTGAA
LOC_Os03g27800
Os.6794.1.S1_at--268--6451Chr03:15918348..15918372 (25 bp)
GATCACCTGAACAGAAGGGCTCTTA
LOC_Os03g27800
Os.6794.1.S1_at--768--10511Chr03:15918290..15918314 (25 bp)
TTCACCCATGTCAAATAGTAGCACG
LOC_Os03g27800
Os.6794.1.S1_at--759--8231Chr03:15918188..15918212 (25 bp)
GGCACAGACGTAGACCTATAAGATT
LOC_Os03g27800
Os.6794.1.S1_at--95--931Chr03:15918153..15918177 (25 bp)
AGGCATATCTTACTGTACATTGTAC
LOC_Os03g27800
Os.6794.1.S1_at--407--6811Chr03:15918092..15918116 (25 bp)
GTTTATTTTCCACAACCCTGTCACT
LOC_Os03g27800
Os.6794.1.S1_at--852--2611Chr03:15918079..15918103 (25 bp)
AACCCTGTCACTTGGTGTGGATACG
LOC_Os03g27800
Os.6794.1.S1_at--159--8671Chr03:15918064..15918088 (25 bp)
TGTGGATACGTGAGGGCATACTTTT
LOC_Os03g27800
Os.6794.1.S1_at--246--6691Chr03:15918006..15918030 (25 bp)
GTTCCTTCGTTTCCAAAACTCAGAG
LOC_Os03g27800
Target Sequence 
AGCAGAGCTTGAGCAGCGTCGGAAAGCCGCAAAACATGTTGCTAATCCTTGGACTGCTCCACCTATAAGATCACCTGAAC
AGAAGGGCTCTTACAAGGAAGACGATGCAGTTCTTACTGAACCAAATTCACCCATGTCAAATAGTAGCACGGATGACTTT
GTTGTGGACCAGAAGTTGAGGAAAAAGAAAACATTCTTCCCACAAATGTCAAGCATTTTGTCTAGAAAGGCACAGACGTA
GACCTATAAGATTAGTCCTGTACAGGCATATCTTACTGTACATTGTACACTGCAAAAATGTAAATGGTGTGTTTGAGTAC
ATAAGTTTATTTTCCACAACCCTGTCACTTGGTGTGGATACGTGAGGGCATACTTTTGTATGATAATTTTGGATATTTTT
TTATACTATAGTTCCTTCGTTTCCAAAACTCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis