Browse Element(s) Details


Os.6824.1.S1_at

Description gb:AK062031.1
DB_XREF= gi:32972049
TID=Os.6824.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G12, full insert sequence.
FL= gb:AK062031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3141011/11Sulfate transporter 1.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31380OsAffx.16467.1.S1_at9/118+19271437..19272388hypothetical protein
LOC_Os08g31380Os.26886.2.S1_s_at7/118+19271437..19272388hypothetical protein
LOC_Os08g31380Os.26886.6.S1_s_at6/118+19271437..19272388hypothetical protein
LOC_Os08g31390NANA8+19273153..19275556retrotransposon protein, putative, unclassified
LOC_Os08g31400Os.26886.1.S1_x_at6/118+19278474..19281819transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g31400Os.26886.3.S1_x_at4/118+19278474..19281819transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g31410Os.6824.1.S1_at11/118+19294618..19299848Sulfate transporter 1.2, putative, expressed
LOC_Os08g31420Os.51880.1.S1_at11/118+19303216..19304628BTB/POZ domain containing protein, expressed
LOC_Os08g31430Os.51870.1.S1_at11/118+19308410..19309802BTB/POZ domain containing protein, expressed
LOC_Os08g31440Os.52625.1.S1_at10/118+19312977..19314460expressed protein
LOC_Os08g31450OsAffx.5995.1.S1_at10/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.19006.1.S1_at5/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.29576.5.S1_at1/118+19315445..19319160MATH domain containing protein
LOC_Os08g31460Os.39989.1.S1_s_at2/118+19323595..19327127tRNA modification GTPase TrmE family protein

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Gene Ontology Classification
GO idTypeName
GO:0008272biological_processsulfate transport
GO:0005886cellular_componentplasma membrane
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6824.1.S1_at--513--10151Chr08:19298833..19298857 (25 bp)
TATCTACTTCTCCAACTCAAACTAT
LOC_Os08g31410
Os.6824.1.S1_at--699--2531Chr08:19298852..19298977 (25 bp)
AACTATGTCCGGGAGAGAACTCTTA
LOC_Os08g31410
Os.6824.1.S1_at--789--6431Chr08:19299039..19299155 (25 bp)
GATCATAGAGATGTCCCCGGTCATA
LOC_Os08g31410
Os.6824.1.S1_at--473--7251Chr08:19299051..19299167 (25 bp)
GTCCCCGGTCATAGATATCGATACA
LOC_Os08g31410
Os.6824.1.S1_at--798--7531Chr08:19299169..19299193 (25 bp)
GTGGCATCCATGCTCTAGAAGATCT
LOC_Os08g31410
Os.6824.1.S1_at--315--5131Chr08:19299465..19299489 (25 bp)
GCAAATCCTGGATCCATCGTCATGG
LOC_Os08g31410
Os.6824.1.S1_at--864--2351Chr08:19299491..19299515 (25 bp)
AAAGCTCTTGTCATCCAAGCTCAAC
LOC_Os08g31410
Os.6824.1.S1_at--469--3111Chr08:19299534..19299558 (25 bp)
AATATTTTCCTCACGGTTGCTGACG
LOC_Os08g31410
Os.6824.1.S1_at--128--5811Chr08:19299555..19299579 (25 bp)
GACGCTGTGCGTTTCTGCACAAGAA
LOC_Os08g31410
Os.6824.1.S1_at--901--10011Chr08:19299647..19299671 (25 bp)
TAGCATATGCGTATCATCTACTTAT
LOC_Os08g31410
Os.6824.1.S1_at--610--9531Chr08:19299823..19299847 (25 bp)
TAAGGCAATCCTTCCTACCCTGAAT
LOC_Os08g31410
Target Sequence 
TATCTACTTCTCCAACTCAAACTATGTCCGGGAGAGAACTCTTAGGTGGTTGACGGAGGAAGAAGAGAAAGCCAAAGCAG
AGGGACAGTCTAAAATCAATTTCTNGATCATAGAGATGTCCCCGGTCATAGATATCGATACAAGTGGCATCCATGCTCTA
GAAGATCTATACAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTNGCAAATCCTGGATCCATCGTCATGGAAAAGCT
CTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAA
GAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGANAAAGAGAGAGATGATGAACAATATTATATAGCATATGC
GTATCATCTACTTATGATATAGAGGAATAGATCCATAGNCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATAC
AATTGGAAATAGTTGTATGGTGAATAGGGTTGCTATAAACNCAAAATNGTCATGACAGACAAATGGAAGGAAACTGATAA
TAATAGGTTAAGGCAATCCTTCCTACCCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis