Browse Element(s) Details


Os.6854.1.S1_at

Description gb:AK062568.1
DB_XREF= gi:32972586
TID=Os.6854.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-A01, full insert sequence.
FL= gb:AK067495.1 gb:AK062568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3604011/11Rhodanese-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35970Os.17852.1.S1_at10/119+20724416..207274876-phosphogluconolactonase family protein, expressed
LOC_Os09g35980Os.52276.1.S1_at11/119+20731108..20734247expressed protein
LOC_Os09g35990OsAffx.18003.1.S1_at11/119+20736566..20741141expressed protein
LOC_Os09g36000Os.49630.1.A1_at8/119+20740993..20742395expressed protein
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6854.1.S1_at--196--6631Chr09:20753841..20753865 (25 bp)
GTTGTAACGAGGCATCTTCTCGGAT
LOC_Os09g36040
Os.6854.1.S1_at--39--291Chr09:20753868..20753892 (25 bp)
ATAGTGCACTAGTTTGATCCTTTCT
LOC_Os09g36040
Os.6854.1.S1_at--794--2431Chr09:20753905..20753929 (25 bp)
AAAAGGATATGCCTCCTTGGACCTC
LOC_Os09g36040
Os.6854.1.S1_at--17--3611Chr09:20753920..20753944 (25 bp)
CTTGGACCTCCTGCCTATATGAAGA
LOC_Os09g36040
Os.6854.1.S1_at--263--6791Chr09:20753948..20753972 (25 bp)
GTTAGATTTCTCATGACCTGCTGCT
LOC_Os09g36040
Os.6854.1.S1_at--122--7231Chr09:20753973..20753997 (25 bp)
GTCGACTTGTCGGTGTATGATACTT
LOC_Os09g36040
Os.6854.1.S1_at--693--6471Chr09:20753991..20754015 (25 bp)
GATACTTGAGCATGCCCATTTGACA
LOC_Os09g36040
Os.6854.1.S1_at--439--3151Chr09:20754045..20754069 (25 bp)
AATTCTCTCGGATCTTGGACTTGGA
LOC_Os09g36040
Os.6854.1.S1_at--814--8111Chr09:20754061..20754085 (25 bp)
GGACTTGGAATGCACTATGAACTTT
LOC_Os09g36040
Os.6854.1.S1_at--384--3271Chr09:20754087..20754111 (25 bp)
CAACATGATGTTGTGATCCAGCCAT
LOC_Os09g36040
Os.6854.1.S1_at--911--7071Chr09:20754137..20754161 (25 bp)
GTCAATGCCAGATACTTATTTGTTG
LOC_Os09g36040
Target Sequence 
GTTGTAACGAGGCATCTTCTCGGATAAATAGTGCACTAGTTTGATCCTTTCTTCTTCCTTTCCCAAAAGGATATGCCTCC
TTGGACCTCCTGCCTATATGAAGATGTGTTAGATTTCTCATGACCTGCTGCTGTCGACTTGTCGGTGTATGATACTTGAG
CATGCCCATTTGACAAAATAGATAAGTATGTTAGAACAAGCATCAATTCTCTCGGATCTTGGACTTGGAATGCACTATGA
ACTTTACAACATGATGTTGTGATCCAGCCATCAGTGATGTCAAGCAGTAAAACTTAGTCAATGCCAGATACTTATTTGTT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis