Browse Element(s) Details


Os.7086.1.S1_s_at

Description gb:BI305420
DB_XREF= gi:14980742
DB_XREF=NLP_1_A17
CLONE=NLP_1_A17
TID=Os.7086.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.7086 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201128.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3552011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35480Os.6776.1.S1_at11/117+21221578..21224176Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35490OsAffx.5534.1.S1_at11/117+21228223..21228678hypothetical protein
LOC_Os07g35500Os.49928.1.S1_at11/117+21230447..21234094expressed protein
LOC_Os07g35510Os.14978.1.S1_a_at11/117+21236583..21239569Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_s_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520OsAffx.16567.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35530Os.33878.1.S1_at6/117+21260093..21262569hypothetical protein
LOC_Os07g35530Os.27102.1.S1_x_at1/117+21260093..21262569hypothetical protein
LOC_Os07g35540OsAffx.5535.1.S1_x_at11/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540OsAffx.5535.1.S1_at11/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540Os.31858.2.S1_x_at1/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540Os.26816.1.A1_s_at1/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35550NANA7+21269020..21269436transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7086.1.S1_s_at--336--2471Chr07:21244176..21244200 (25 bp)
AACACAATGGTTGCGCATGCGTCTT
LOC_Os07g35520
Os.7086.1.S1_s_at--905--9131Chr07:21244159..21244183 (25 bp)
TGCGTCTTTCGCATTCAATGACTAC
LOC_Os07g35520
Os.7086.1.S1_s_at--110--2051Chr07:21244100..21244124 (25 bp)
ACTTTGCTGGCGCTGCTTATATTGT
LOC_Os07g35520
Os.7086.1.S1_s_at--713--4951Chr07:21243960..21243984 (25 bp)
GCATTTGCGACCCAAATCCAAGTTG
LOC_Os07g35520
Os.7086.1.S1_s_at--1055--2811Chr07:21243941..21243965 (25 bp)
AAGTTGGTGTATCGCGAACCCTGCA
LOC_Os07g35520
Os.7086.1.S1_s_at--1043--5051Chr07:21243873..21243897 (25 bp)
GCAGCTGTGCAGACTGCAGCGCCAT
LOC_Os07g35520
Os.7086.1.S1_s_at--773--7771Chr07:21243841..21243865 (25 bp)
GGTGCACGGTGTTTCGAGCCTAACA
LOC_Os07g35520
Os.7086.1.S1_s_at--1138--9811Chr07:21243821..21243845 (25 bp)
TAACACTAAGGTGGCGCACGCATCC
LOC_Os07g35520
Os.7086.1.S1_s_at--357--151Chr07:21243780..21243804 (25 bp)
ATTACCAGCGTGTTGGCCGAGTCAG
LOC_Os07g35520
Os.7086.1.S1_s_at--68--31Chr07:21243368..21243392 (25 bp)
ATTGGAAACTGCGTCCTTCCGCCAA
LOC_Os07g35520
Os.7086.1.S1_s_at--994--3631Chr07:21243353..21243377 (25 bp)
CTTCCGCCAATGCTTGAACTGGACA
LOC_Os07g35520
Target Sequence 
AACACAATGGTTGCGCATGCGTCTTTCGCATTCAATGACTACTACCAGCGGATGGGCCAAGCCAATGGGACGTGCGACTT
TGCTGGCGCTGCTTATATTGTCTACCAACCATCAGAAAGCATTTGCGACCCAAATCCAAGTTGGTGTATCGCGAACCCTG
CAGTTGGGGACATGCGGCTACAGGCAGCCCTAGACTATGCATGCGGCAGCTGTGCAGACTGCAGCGCCATCCAGCCCGGT
GCACGGTGTTTCGAGCCTAACACTAAGGTGGCGCACGCATCCTACGCATTCAACGACTATTACCAGCGTGTTGGCCGAGT
CAGTGGCTCGTGTGACTTCGGTGGTGCTGGTTCCATTACCTANCAGGCACCAGAGATTGGAAACTGCGTCCTTCCGCCAA
TGCTTGAACTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7086.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis