Browse Element(s) Details


Os.7133.1.S1_at

Description gb:AK106208.1
DB_XREF= gi:32991417
TID=Os.7133.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative carboxymethylenebutenolidase (P0702H08.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G04, full insert sequence.
FL= gb:AK104379.1 gb:AK059992.1 gb:AK106208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3470011/11Dienelactone hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34660Os.34335.1.S1_x_at9/111+19437755..19440162expressed protein
LOC_Os01g34660Os.34335.1.S1_at7/111+19437755..19440162expressed protein
LOC_Os01g34670Os.32787.2.S1_x_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34670Os.32787.3.S1_s_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34680Os.41057.1.S1_at10/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.55478.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.5306.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34690Os.8252.1.S1_s_at11/111+19456826..19460730expressed protein
LOC_Os01g34690Os.8252.1.S1_at4/111+19456826..19460730expressed protein
LOC_Os01g34690Os.37713.1.S1_at1/111+19456826..19460730expressed protein
LOC_Os01g34700Os.7133.1.S1_at11/111+19462649..19466740Dienelactone hydrolase family protein, expressed
LOC_Os01g34710OsAffx.31780.1.S1_at11/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34710OsAffx.31780.2.S1_s_at11/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34710OsAffx.31780.2.S1_x_at2/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34720OsAffx.6971.1.S1_at3/111+19479590..19481575retrotransposon protein, putative, unclassified
LOC_Os01g34720OsAffx.31700.1.S1_at1/111+19479590..19481575retrotransposon protein, putative, unclassified
LOC_Os01g34730Os.33878.1.S1_at2/111+19486168..19490326retrotransposon protein, putative, unclassified
LOC_Os01g34730Os.27102.1.S1_x_at1/111+19486168..19490326retrotransposon protein, putative, unclassified
LOC_Os01g34730OsAffx.22699.1.S1_x_at1/111+19486168..19490326retrotransposon protein, putative, unclassified
LOC_Os01g34740NANA1+19491271..19491708transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7133.1.S1_at--1071--791Chr01:19465881..19465905 (25 bp)
ATGGGAGGCGCTTTGTCAATTGCAA
LOC_Os01g34700
Os.7133.1.S1_at--628--7511Chr01:19465906..19465930 (25 bp)
GTGGAGTTTCAGTCCCAGAGGTTGA
LOC_Os01g34700
Os.7133.1.S1_at--228--6531Chr01:19466035..19466338 (25 bp)
GATTTGCAGATGTCACGGCAGCCAA
LOC_Os01g34700
Os.7133.1.S1_at--796--5391Chr01:19466351..19466375 (25 bp)
GAAGCTCAAGTCATCTGGCGTGCCA
LOC_Os01g34700
Os.7133.1.S1_at--981--8471Chr01:19466366..19466390 (25 bp)
TGGCGTGCCACATGAAGTCCACATC
LOC_Os01g34700
Os.7133.1.S1_at--158--8331Chr01:19466397..19466421 (25 bp)
GGCTGCTCGCATGCTTTTATGAACA
LOC_Os01g34700
Os.7133.1.S1_at--839--8971Chr01:19466416..19466440 (25 bp)
TGAACACATCACCTGAGGCCGTCAA
LOC_Os01g34700
Os.7133.1.S1_at--212--8591Chr01:19466496..19466520 (25 bp)
TGGTCTCGCTTCTCGACTTGGATGG
LOC_Os01g34700
Os.7133.1.S1_at--274--2071Chr01:19466511..19466535 (25 bp)
ACTTGGATGGGTCGTTTCCTTGGAT
LOC_Os01g34700
Os.7133.1.S1_at--659--7951Chr01:19466532..19466556 (25 bp)
GGATCGGCGTGAGCCATTTACGCAT
LOC_Os01g34700
Os.7133.1.S1_at--1009--3871Chr01:19466690..19466714 (25 bp)
CTGTGGTTTTACTGTGCTTTCGAGA
LOC_Os01g34700
Target Sequence 
ATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGATGCNTGTTGTGGCTTTCTATGGGACACCAC
CTTCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTT
GCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGG
CTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGG
CAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATAT
ATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAA
TTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGGTTTTACTGTGCTTTCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis