Browse Element(s) Details


Os.7213.1.S1_at

Description gb:AK064760.1
DB_XREF= gi:32974778
TID=Os.7213.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H01, full insert sequence.
FL= gb:AK064760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g262292/1140S ribosomal protein S9, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26180NANA3+14967001..14967447hypothetical protein
LOC_Os03g26190OsAffx.13047.1.S1_at11/113+14971069..14971435hypothetical protein
LOC_Os03g26200Os.23168.1.S1_at11/113+14971776..14976168Methyltransferase, putative, expressed
LOC_Os03g26210Os.9216.1.S1_at11/113+14978830..14980902Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g26220OsAffx.13048.1.S1_at9/113+14981280..14983325expressed protein
LOC_Os03g26229Os.7213.1.S1_at2/113+14984751..1498671140S ribosomal protein S9, putative
LOC_Os03g26240OsAffx.25233.1.S1_at11/113+14987517..14988215hypothetical protein
LOC_Os03g26250OsAffx.3331.1.S1_at11/113+14989924..14990498hypothetical protein
LOC_Os03g26260OsAffx.13049.1.S1_at11/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26260OsAffx.22180.1.S1_at1/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26280OsAffx.13050.1.S1_at11/113+15008456..15009721expressed protein
LOC_Os03g26280OsAffx.7632.1.S1_at1/113+15008456..15009721expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7213.1.S1_at--703--5451Chr03:14985682..14985706 (25 bp)
GAACGGCACGGTGAAATCCATTCAT
LOC_Os03g26229
Os.7213.1.S1_at--645--751Chr03:14985714..14985738 (25 bp)
ATGTACTCATCAGGCAACACCACAT
LOC_Os03g26229
Os.7213.1.S1_at--514--9991Chr03:14986810..14986834 (25 bp)
TAGCCACCGAGGGTTGTCAAAAATT
NONE
Os.7213.1.S1_at--1067--6511Chr03:14986858..14986882 (25 bp)
GATTTGAAGTTTATCTCCTCATGAA
NONE
Os.7213.1.S1_at--654--2191Chr03:14986924..14986948 (25 bp)
ACAAGCTAATACTGTTGGGAATATT
NONE
Os.7213.1.S1_at--75--8151Chr03:14986941..14986965 (25 bp)
GGAATATTTGAAGTGTTGGGTACCT
NONE
Os.7213.1.S1_at--964--5311Chr03:14986950..14986974 (25 bp)
GAAGTGTTGGGTACCTTGTCTTTTG
NONE
Os.7213.1.S1_at--798--8611Chr03:14986957..14986981 (25 bp)
TGGGTACCTTGTCTTTTGAAAACTG
NONE
Os.7213.1.S1_at--707--4311Chr03:14986963..14986987 (25 bp)
CCTTGTCTTTTGAAAACTGGCTTTG
NONE
Os.7213.1.S1_at--138--5531Chr03:14986974..14986998 (25 bp)
GAAAACTGGCTTTGATTATACTAAA
NONE
Os.7213.1.S1_at--648--9811Chr03:14986995..14987019 (25 bp)
TAAAGCGGATACTAAATCTGGCCTC
NONE
Target Sequence 
GAACGGCACGGTGAAATCCATTCATCATGATCATGTACTCATCAGGCAACACCACATCAGAGTGGGAAGGCAGCTTGTCA
ACATCCCCTTATTCATGGTGAGACTTGATTAGAGAAGCACATCGACTTCTCCCTTACCAGCCCACNGGCGGTGAGCCTGG
AAGGGTNANAGAGAANNANCNNNANNNNNNNCTNNGGNGNTGNTGGTGATGGTGATGGTGATGAAGAGGAAGAGTGAATA
TGTGATGTCAGCTCGGTTTTGTTATAGGACCTAATTTTGCGGGAACTTGTCTTATTAGGGACCTAATTTTTGTTACATGA
GTAGAAAACAAAAATTAGCCACCGAGGGTTGTCAAAAATTGTTGTTTGCGCTGNTGAAATTTTGATTTGAAGTTTATCTC
CTCATGAACATGTGAATTCAGTGTACCCAGGAAATATATCCCAGGTCTNACAAGCTAATACTGTTGGGAATATTTGAAGT
GTTGGGTACCTTGTCTTTTGAAAACTGGCTTTGATTATACTAAAGCGGATACTAAATCTGGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis