Browse Element(s) Details


Os.7217.1.S1_a_at

Description gb:AY336993.1
DB_XREF= gi:33243057
TID=Os.7217.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7217 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) KEAP1 mRNA, complete cds.
PROD=KEAP1
FL= gb:AK066661.1 gb:AY336993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0714011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed
LOC_Os01g07120Os.21563.1.S1_a_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07120Os.21563.1.S2_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07130Os.32760.1.S1_at11/111+3355336..3357462expressed protein
LOC_Os01g07140Os.7217.1.S1_a_at11/111+3358811..3364460Kelch motif family protein, expressed
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein
LOC_Os01g07160OsAffx.22760.2.S1_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07160OsAffx.22760.2.S1_s_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07170Os.14483.1.S1_x_at9/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07170Os.46162.1.S1_at2/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07180OsAffx.28142.2.S1_s_at11/111+3388559..3389813hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7217.1.S1_a_at--480--6911Chr01:3359581..3359605 (25 bp)
GTAGAGATTTTTGACACCCGTGCCA
LOC_Os01g07140
Os.7217.1.S1_a_at--77--4691Chr01:3359506..3359530 (25 bp)
GCGGTTACATTGGACGGCAACGCAT
LOC_Os01g07140
Os.7217.1.S1_a_at--485--8231Chr01:3359491..3359515 (25 bp)
GGCAACGCATACCTCATTGGTGGTA
LOC_Os01g07140
Os.7217.1.S1_a_at--341--451Chr01:3359294..3359318 (25 bp)
ATCTCTGGTTCCAAGGCATTCGGGA
LOC_Os01g07140
Os.7217.1.S1_a_at--886--8191Chr01:3359272..3359296 (25 bp)
GGAAGAGAGCTTTCGCATGCGCCGT
LOC_Os01g07140
Os.7217.1.S1_a_at--774--4151Chr01:3359253..3359277 (25 bp)
CGCCGTTGCCATTTGACAGGATTGC
LOC_Os01g07140
Os.7217.1.S1_a_at--970--7551Chr01:3359208..3359232 (25 bp)
GGGCCGGTTTTGTACAGCACCAGTC
LOC_Os01g07140
Os.7217.1.S1_a_at--387--71Chr01:3359132..3359156 (25 bp)
ATTGCTGAGCACTGACGCCTGACGG
LOC_Os01g07140
Os.7217.1.S1_a_at--1107--7311Chr01:3359095..3359119 (25 bp)
GTGCATCCCAGTCATACGGTTTTTA
LOC_Os01g07140
Os.7217.1.S1_a_at--418--8591Chr01:3359041..3359065 (25 bp)
TGGTATGCGTTAACTCTGCCCGTTG
LOC_Os01g07140
Os.7217.1.S1_a_at--661--7911Chr01:3358988..3359012 (25 bp)
GGTTGTCACCTGATTGTAGCGGAGC
LOC_Os01g07140
Target Sequence 
GTAGAGATTTTTGACACCCGTGCCAACTCATGGAGAAGGGGGAGCCCACTCAGCGTCCCAAGAGCACACGGATGTGCGGT
TACATTGGACGGCAACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTGTTGAGGTTTACAAGG
AGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCATTCGGGAAGAGAGCTTTCGCATGCGCCGTTGCCATTTGACAGGAT
TGCAGAAGTGCAGATGAACCCCCGGGCCGGTTTTGTACAGCACCAGTCCCCAACCCCGCCTCACAGTATTACCTTNTNTC
AAGCGAAATATTGCCGCTCATTGCTGAGCACTGACGCCTGACGGCCCATCCATTCTGTGCATCCCAGTCATACGGTTTTT
ACATTTTAGAAACAACACCGTAGCGAGTTNTGGTATGCGTTAACTCTGCCCGTTGTTGTTTTCTCACTGAAGATAGGTGT
TGTTGGTTGTCACCTGATTGTAGCGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7217.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis