Browse Element(s) Details


Os.7218.1.S1_at

Description gb:AK067642.1
DB_XREF= gi:32977660
TID=Os.7218.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108J23, full insert sequence.
FL= gb:AK072105.1 gb:AK067642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0115011/11D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01100Os.18993.2.S1_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01100Os.18993.2.S1_x_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01120OsAffx.11855.1.S1_at11/112+66677..66953hypothetical protein
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein
LOC_Os02g01140Os.7218.2.S1_at11/112+78174..79540GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01150Os.7218.1.S1_at11/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01150Os.7218.1.S2_at9/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01160OsAffx.6724.2.S1_s_at1/112+85332..85637SKP1-like protein 1B, putative
LOC_Os02g01170OsAffx.11856.1.S1_x_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S1_s_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S2_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170OsAffx.11856.1.S1_at9/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0009853biological_processphotorespiration
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0009507cellular_componentchloroplast
GO:0004617molecular_functionphosphoglycerate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7218.1.S1_at--240--5631Chr02:80749..80773 (25 bp)
GACATGAAGAATGCCGTCGTCGTAC
LOC_Os02g01150
Os.7218.1.S1_at--487--471Chr02:80513..80738 (25 bp)
ATCTGCCTCCAAGTGGACGCGCGAA
LOC_Os02g01150
Os.7218.1.S1_at--271--5292Chr06:15317201..15317340 (25 bp)
GAATGGCAACACTTGCTGCTCTAAA
NONE
Os.7218.1.S1_at--509--4771Chr02:80302..80497 (25 bp)
GCTGCTCTAAACGTTCTTGGCAAGA
LOC_Os02g01150
Os.7218.1.S1_at--676--10571Chr02:80232..80256 (25 bp)
TTCTCAAGGAGGATGCAACGCCGCC
LOC_Os02g01150
Os.7218.1.S1_at--685--4271Chr02:80079..80103 (25 bp)
CCTGCCATCGTCAAAGCTCTAAGAA
LOC_Os02g01150
Os.7218.1.S1_at--877--7151Chr02:79995..80019 (25 bp)
GTCTAGATCGAGGTGCATATGCTTG
LOC_Os02g01150
Os.7218.1.S1_at--1047--251Chr02:79979..80003 (25 bp)
ATATGCTTGCTGTTCTAGCGGAGCG
LOC_Os02g01150
Os.7218.1.S1_at--218--7391Chr02:79812..79836 (25 bp)
GTGAGTCTTAAAACATGCGAGCTAC
LOC_Os02g01150
Os.7218.1.S1_at--520--6791Chr02:79781..79805 (25 bp)
GTTATTACACCCGTACTAGCTACTA
LOC_Os02g01150
Os.7218.1.S1_at--335--3011Chr02:79733..79757 (25 bp)
AATGAAGATACCCTAGCTGCCTGTT
LOC_Os02g01150
Target Sequence 
GACATGAAGAATGCCGTCGTCGTACCTCACATCGCATCTGCCTCCAAGTGGACGCGCGAAGGAATGGCAACACTTGCTGC
TCTAAACGTTCTTGGCAAGATCAAGGGTTATCCGGTTTGGGGGAACCCGAATCTAGTGGAGCCATTTCTCAAGGAGGATG
CAACGCCGCCAGCTGCTTGCCCCAGCATTGTTAATGCCAAACAACTCGGCCTGCCATCGTCAAAGCTCTAAGAACTGGAG
CTCGGTCCATCATATTATATCTGTCGGTTCAAGATCATACTCCACTACATGAAGTCTAGATCGAGGTGCATATGCTTGCT
GTTCTAGCGGAGCGGGCAACAAGCTGTCAGCCAGACTTTTGATATNTAATTTCACACACACACACACACACACACACACA
CATATATATATATATATATAATATACTAGCTAGCTTCAATTCCTTGTTATTATACCACTAGTACGACTGTAATTTTGTGA
GTCTTAAAACATGCGAGCTACATGTATGTTATTACACCCGTACTAGCTACTACTGTAGATTAATTACTGTTACGAAATGA
AGATACCCTAGCTGCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis