Browse Element(s) Details


Os.7218.1.S2_at

Description gb:AK072105.1
DB_XREF= gi:32982128
TID=Os.7218.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119J12, full insert sequence.
FL= gb:AK072105.1 gb:AK067642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g011509/11D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01100Os.18993.2.S1_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01100Os.18993.2.S1_x_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01120OsAffx.11855.1.S1_at11/112+66677..66953hypothetical protein
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein
LOC_Os02g01140Os.7218.2.S1_at11/112+78174..79540GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01150Os.7218.1.S1_at11/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01150Os.7218.1.S2_at9/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01160OsAffx.6724.2.S1_s_at1/112+85332..85637SKP1-like protein 1B, putative
LOC_Os02g01170OsAffx.11856.1.S1_x_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S1_s_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S2_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170OsAffx.11856.1.S1_at9/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0009853biological_processphotorespiration
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0009507cellular_componentchloroplast
GO:0004617molecular_functionphosphoglycerate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7218.1.S2_at--89--5671Chr02:79014..79038 (25 bp)
GACATGGTCCTCTGCGACGGCACGC
LOC_Os02g01150
Os.7218.1.S2_at--957--9331Chr02:78866..78890 (25 bp)
TCGCCCGCATGGTGAAGTAGGTGTT
LOC_Os02g01150
Os.7218.1.S2_at--849--5031Chr02:78820..78844 (25 bp)
GCAGATGGCGAAGATGCCCCTGGTC
LOC_Os02g01150
Os.7218.1.S2_at--734--7391Chr02:78642..78666 (25 bp)
GTGAGGAGCTCCTCAGTCGACAGCT
LOC_Os02g01150
Os.7218.1.S2_at--379--771Chr02:78609..78633 (25 bp)
AGGTACGGCGGGAGAAGCTCCTTCA
LOC_Os02g01150
Os.7218.1.S2_at--815--2691Chr02:78595..78619 (25 bp)
AAGCTCCTTCAGACCAAGACGGGAA
LOC_Os02g01150
Os.7218.1.S2_at--470--5411Chr02:78573..78597 (25 bp)
GAAGCTGCATATGCATTCCGATCGA
LOC_Os02g01150
Os.7218.1.S2_at--870--631Chr02:78563..78587 (25 bp)
ATGCATTCCGATCGATCCGTTGTTA
LOC_Os02g01150
Os.7218.1.S2_at--948--6371Chr02:78550..78574 (25 bp)
GATCCGTTGTTAGTTGTTGTTGTGC
LOC_Os02g01150
Os.7218.1.S2_at--55--6631Chr11:18163947..18163967 (21 bp)
GTTGTGCATGCATGTACTCATATGA
NONE
Os.7218.1.S2_at--379--2411Chr02:78483..78507 (25 bp)
AAAAGCATGTTGCTAGTTACCGATG
NONE
Target Sequence 
GACATGGTCCTCTGCGACGGCACGCACCCGATGGGCGGCATCCCGATGATGGCCACCTTCCTCGCCCCGGCCTTCACCAG
CTCGTCCACGAACGCCGCCGCGTGGTGCACCAGCAGCGCCGCGTACGAGGCGTGGTCGTAGCCGGGCCTCGCCCGCATGG
TGAAGTAGGTGTTGGCCACGTCGTCGCTGCCGGCGCAGATGGCGAAGATGCCCCTGGTCATCATGTCCGCCACCCGCGCG
TCCCCGGCGGCGCCGCGCACCCGCTCCTTGTACTGCTGGAACAGCAGCAGCTGGTCGGGCATGGAGATGACGGAGGCCAG
GCGAGGCGTCAGCGGGTCGAAGCCGGTGCCCCCCGACGCGAAGCTGACGCCGGTGAGGAGCTCCTCAGTCGACAGCTCCG
GCGACAGGTACGGCGGGAGAAGCTCCTTCAGACCAAGACGGGAAGCTGCATATGCATTCCGATCGATCCGTTGTTAGTTG
TTGTTGTGCATGCATGTACTCATATGAGAAATGAGAATTGACAAGAGAAAGAAAAGCATGTTGCTAGTTACCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7218.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis