Browse Element(s) Details


Os.7218.2.S1_at

Description gb:AK067036.1
DB_XREF= gi:32977054
TID=Os.7218.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092C19, full insert sequence.
FL= gb:AK067036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0114011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01100Os.18993.2.S1_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01100Os.18993.2.S1_x_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01120OsAffx.11855.1.S1_at11/112+66677..66953hypothetical protein
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein
LOC_Os02g01140Os.7218.2.S1_at11/112+78174..79540GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01150Os.7218.1.S1_at11/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01150Os.7218.1.S2_at9/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01160OsAffx.6724.2.S1_s_at1/112+85332..85637SKP1-like protein 1B, putative
LOC_Os02g01170OsAffx.11856.1.S1_x_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S1_s_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S2_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170OsAffx.11856.1.S1_at9/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0008415molecular_functionacyltransferase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7218.2.S1_at--1114--4651Chr02:79014..79038 (25 bp)
GCGTGCCGTCGCAGAGGACCATGTC
LOC_Os02g01140
Os.7218.2.S1_at--654--2771Chr02:79148..79172 (25 bp)
AAGACCAAGCTTGTTTTCATGGACA
LOC_Os02g01140
Os.7218.2.S1_at--602--451Chr02:79172..79196 (25 bp)
ATCTACGGCTTCCTGATGGACATGA
LOC_Os02g01140
Os.7218.2.S1_at--395--2111Chr02:79191..79215 (25 bp)
ACATGATGATGCGTCCACGGGCGTA
LOC_Os02g01140
Os.7218.2.S1_at--580--7251Chr02:79203..79227 (25 bp)
GTCCACGGGCGTACGGCTTCAGCGA
LOC_Os02g01140
Os.7218.2.S1_at--905--1551Chr02:79223..79247 (25 bp)
AGCGACTCCACCATGGGTTGCTGCG
LOC_Os02g01140
Os.7218.2.S1_at--226--9251Chr02:79257..79281 (25 bp)
TCCTGGAGGTTTCCGTCCTCTGCAA
LOC_Os02g01140
Os.7218.2.S1_at--308--4231Chr02:79314..79338 (25 bp)
CCGACTATCTCTTCTGGGACAGCTA
LOC_Os02g01140
Os.7218.2.S1_at--777--1791Chr02:79341..79365 (25 bp)
ACCCCACCGAGAAAGCTTACAGCAT
LOC_Os02g01140
Os.7218.2.S1_at--159--471Chr02:79424..79448 (25 bp)
ATCTCTGTCCATCATTATTATATTA
LOC_Os02g01140
Os.7218.2.S1_at--154--9091Chr02:79474..79498 (25 bp)
TGCTCCCTCTTTTTTGTTTCAACTT
LOC_Os02g01140
Target Sequence 
GCGTGCCGTCGCAGAGGACCATGTCGGGGGGCATGGAGAGGCGCTGCTCGGAGGGGCACAACCAGATCGCGGTGGCGTAC
AACGCCGGGATGGAGAGGAGGATGGAGGAGATGCAGGCCAAGAAGAAGAGCACCAAGACCAAGCTTGTTTTCATGGACAT
CTACGGCTTCCTGATGGACATGATGATGCGTCCACGGGCGTACGGCTTCAGCGACTCCACCATGGGTTGCTGCGGCACTG
GCCTCCTGGAGGTTTCCGTCCTCTGCAACGCCCTCACCTCCTCCGTCTGCACCCCCGTCTCCGACTATCTCTTCTGGGAC
AGCTACCACCCCACCGAGAAAGCTTACAGCATCCTCNCCGACTTNGTNTACGATAATTACGTCAANAAACTCCTCCTCGA
CTAACTATANATCTCTGTCCATCATTATTATATTATATATATNTAGCTTTTGCTTTAATTTGCTCCCTCTTTTTTGTTTC
AACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7218.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis