Browse Element(s) Details


Os.7283.2.S1_x_at

Description gb:NM_185036.1
DB_XREF= gi:34897157
GEN=OSJNBa0052F07.12
TID=Os.7283.2
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.7283 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0052F07.12), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5859011/11RE14858p, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58560OsAffx.25755.1.S1_at11/113+33283173..33283679hypothetical protein
LOC_Os03g58570Os.44984.1.S1_at11/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58570Os.44984.2.S1_x_at10/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58580Os.11778.1.S1_a_at11/113+33298997..33301304nodulin family protein, putative, expressed
LOC_Os03g58590Os.7283.2.S1_x_at11/113+33302937..33309543RE14858p, putative, expressed
LOC_Os03g58600Os.40026.1.S1_at11/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58600OsAffx.2925.1.S1_at1/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58610Os.34434.1.S1_at11/113+33324069..33326158expressed protein
LOC_Os03g58620Os.5642.1.S1_at10/113+33327025..33330039small multi-drug export protein, putative, expressed
LOC_Os03g58630Os.12826.1.S1_at11/113+33330289..33332513Thioredoxin H-type 5, putative, expressed
LOC_Os03g58640Os.12938.1.S1_at11/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58640Os.49478.1.S1_at1/113+33333049..33341193FHA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7283.2.S1_x_at--759--171Chr03:33308881..33308905 (25 bp)
ATATTTTACCCTGACCTGGTGGATA
LOC_Os03g58590
Os.7283.2.S1_x_at--136--7951Chr03:33308994..33309102 (25 bp)
GGATATAGCTTTCCGTATTGTCAAC
LOC_Os03g58590
Os.7283.2.S1_x_at--303--5311Chr03:33309126..33309150 (25 bp)
GAAGGGCTTCAAGTGCACATTCGAA
LOC_Os03g58590
Os.7283.2.S1_x_at--830--2671Chr03:33309181..33309205 (25 bp)
AAGCGCTACCGCTACAGGCGATAAA
LOC_Os03g58590
Os.7283.2.S1_x_at--859--5311Chr03:33309248..33309272 (25 bp)
GAAGTTGGTCTTGCTTTTCTTACCT
LOC_Os03g58590
Os.7283.2.S1_x_at--381--10571Chr03:33309264..33309288 (25 bp)
TTCTTACCTGAGAGCCCTATGCAAA
LOC_Os03g58590
Os.7283.2.S1_x_at--336--10091Chr03:33309289..33309313 (25 bp)
TAGGTTTGCTCGGATACCAACTCTG
LOC_Os03g58590
Os.7283.2.S1_x_at--1115--2531Chr03:33309307..33309331 (25 bp)
AACTCTGGAGTCGACTACACATGCT
LOC_Os03g58590
Os.7283.2.S1_x_at--179--1071Chr03:33309362..33309386 (25 bp)
AGGGTAGCATACTAGCATCCCGTAC
LOC_Os03g58590
Os.7283.2.S1_x_at--378--1492Chr03:33309424..33309448 (25 bp)
AGCAACGAAGTCTCCTGTGTACATT
LOC_Os03g58590
Os.7283.2.S1_x_at--485--10791Chr03:33309447..33309471 (25 bp)
TTGTAACTTCCTTTTTTCTGCTTTG
LOC_Os03g58590
Target Sequence 
ATATTTTACCCTGACCTGGTGGATAAATCAAAGGCGCCAACATACACGATAGAGAAAGACGGGAGCACCGGTGAGACATG
CCTCATAAGATTCCATGCGGGCCCTCCATATGAGGATATAGCTTTCCGTATTGTCAACAAGGAGTGGGAATACTCACATA
AGAAGGGCTTCAAGTGCACATTCGAACGTGGGATTCTCCACCTCTATTTCAACTTCAAGCGCTACCGCTACAGGCGATAA
AATGCCACGCAAGGAAGACGTTTTGATCTCCATTGTGCTGTTAGAAGTTGGTCTTGCTTTTCTTACCTGAGAGCCCTATG
CAAATAGGTTTGCTCGGATACCAACTCTGGAGTCGACTACACATGCTCATCCGAGATCATATGTACTAAGTGAGAACAGG
GTAGCATACTAGCATCCCGTACTTATGCTGATTAGGCTCTTTGTTAGCGGTTTGAAAATAGCAACGAAGTCTCCTGTGTA
CATTGTAACTTCCTTTTTTCTGCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7283.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis