Browse Element(s) Details


Os.7328.1.S1_at

Description gb:AU100749
DB_XREF= gi:9864999
DB_XREF=AU100749
CLONE=C12706
TID=Os.7328.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7328 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g181401/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18090Os.37452.1.S1_at11/112+10509167..10512212expressed protein
LOC_Os02g18100OsAffx.2661.1.S1_at11/112+10514511..10514915hypothetical protein
LOC_Os02g18110OsAffx.12095.1.S1_at7/112+10519498..10524540hypothetical protein
LOC_Os02g18110OsAffx.15378.1.S1_at1/112+10519498..10524540hypothetical protein
LOC_Os02g18120OsAffx.30226.4.S1_x_at3/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18120OsAffx.24587.1.S1_x_at2/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18130OsAffx.24301.1.S1_at11/112+10532591..10533117hypothetical protein
LOC_Os02g18140OsAffx.12096.1.S1_at10/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18140Os.7328.1.S1_at1/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18150Os.52982.1.S1_at11/112+10540686..10543153expressed protein
LOC_Os02g18160OsAffx.2662.1.S1_at11/112+10545839..10546509hypothetical protein
LOC_Os02g18160OsAffx.31859.1.S1_at1/112+10545839..10546509hypothetical protein
LOC_Os02g18170OsAffx.2663.1.S1_at11/112+10548893..10550861hypothetical protein
LOC_Os02g18180Os.49251.1.S1_at11/112+10552436..10558879ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os02g18190OsAffx.2664.1.S1_at11/112+10564185..10564572hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7328.1.S1_at--642--3451Chr02:10539193..10539628 (25 bp)
CAGTCTCTGAGTCTTTATGGATGGA
LOC_Os02g18140
Os.7328.1.S1_at--696--9531Chr02:10539691..10539715 (25 bp)
TCTATAGCAGAATCTCGCCATCCAT
NONE
Os.7328.1.S1_at--115--471Chr02:10539702..10539726 (25 bp)
ATCTCGCCATCCATATTTTCTTATA
NONE
Os.7328.1.S1_at--795--171Chr02:10539716..10539740 (25 bp)
ATTTTCTTATACTCTGTTGTCCTGT
NONE
Os.7328.1.S1_at--932--3871Chr02:10539737..10539761 (25 bp)
CTGTTTCCGCATAAGATGACTTCTT
NONE
Os.7328.1.S1_at--905--9911Chr02:10539776..10539800 (25 bp)
TACTGGGCAGGCATAATGCGTCTGA
NONE
Os.7328.1.S1_at--1142--8131Chr02:10539835..10539859 (25 bp)
GGAAATTCCTGTTTTTGTGCCAAAT
NONE
Os.7328.1.S1_at--758--6471Chr02:10539873..10539897 (25 bp)
GATACATACCATGAGAACCTCTCTG
NONE
Os.7328.1.S1_at--878--5431Chr02:10539887..10539911 (25 bp)
GAACCTCTCTGTTAAGATGTGTGCA
NONE
Os.7328.1.S1_at--142--7991Chr02:10539968..10539992 (25 bp)
GGATGCGATCTTGTTAAGCTCATAC
NONE
Os.7328.1.S1_at--68--2691Chr02:10539983..10540007 (25 bp)
AAGCTCATACTAGAACCTTCGAGTG
NONE
Target Sequence 
CAGTCTCTGAGTCTTTATGGATGGAGCAACTGGCGAGATGGAGCTAATAGATGCATGACTGTTGGAGAGCTACCGGCACT
TCTATAGCAGAATCTCGCCATCCATATTTTCTTATACTCTGTTGTCCTGTTTCCGCATAAGATGACTTCTTCTTATCAAG
AAATTTACTGGGCAGGCATAATGCGTCTGAAAGGTATTGCACTTGATTATGCGACAAGTGTGTTGGAAATTCCTGTTTTT
GTGCCAAATAAGTGGGGAGAGAGATACATACCATGAGAACCTCTCTGTTAAGATGTGTGCATGATTTGATTGTGCTCAAA
AGGTTGTATAAATTACAATTTCATTTGTGATGTTTTTGGATGCGATCTTGTTAAGCTCATACTAGAACCTTCGAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis