Browse Element(s) Details


Os.7402.1.S1_at

Description gb:AK102960.1
DB_XREF= gi:32988169
TID=Os.7402.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115H20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115H20, full insert sequence.
FL= gb:AK102960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0801011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07940Os.19587.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.10620.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.19587.1.S2_at10/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07950OsAffx.26781.2.S1_at10/115+4287115..4288441F-box domain containing protein, expressed
LOC_Os05g07960Os.26779.1.S1_at11/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07960OsAffx.26779.1.S1_x_at1/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07970Os.14919.1.S1_at1/115+4293296..4294795hypothetical protein
LOC_Os05g07980OsAffx.26779.1.S1_x_at9/115+4296238..4299886expressed protein
LOC_Os05g07980OsAffx.26779.1.S1_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.51733.1.S1_x_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.50315.2.A1_at1/115+4296238..4299886expressed protein
LOC_Os05g07990OsAffx.26780.1.S1_at9/115+4300724..4301864hypothetical protein
LOC_Os05g08000OsAffx.26781.1.S1_at11/115+4303863..4305161hypothetical protein
LOC_Os05g08010Os.7402.1.S1_at11/115+4307738..4309362F-box domain containing protein, expressed
LOC_Os05g08020NANA5+4314883..4316263retrotransposon protein, putative, unclassified
LOC_Os05g08030NANA5+4323743..4324908transposon protein, putative, unclassified
LOC_Os05g08040OsAffx.31777.1.S1_at2/115+4326399..4328886retrotransposon protein, putative, unclassified
LOC_Os05g08040OsAffx.25156.1.S1_x_at2/115+4326399..4328886retrotransposon protein, putative, unclassified
LOC_Os05g08040OsAffx.31777.3.S1_at1/115+4326399..4328886retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7402.1.S1_at--375--7471Chr05:4308232..4308256 (25 bp)
GTGTGACTAACGAACTGCTGTATGA
LOC_Os05g08010
Os.7402.1.S1_at--247--1651Chr05:4308182..4308206 (25 bp)
AGCGAGTTCTGCTATGTGGTCATAG
LOC_Os05g08010
Os.7402.1.S1_at--648--2031Chr05:4308125..4308149 (25 bp)
ACTAGAGACTACACGCTGATGGCAT
LOC_Os05g08010
Os.7402.1.S1_at--611--6891Chr05:4308049..4308073 (25 bp)
GTATACTGGAGTGTCTTCCCTATGT
LOC_Os05g08010
Os.7402.1.S1_at--480--6691Chr05:4308026..4308050 (25 bp)
GTTCCACTCTATGCAGAAACACTGT
LOC_Os05g08010
Os.7402.1.S1_at--821--2831Chr05:4307989..4308013 (25 bp)
AAGTCAGTTTCTTTGTAGTACACCA
LOC_Os05g08010
Os.7402.1.S1_at--926--6931Chr05:4307975..4307999 (25 bp)
GTAGTACACCAGTGTTGCTTGGCAT
LOC_Os05g08010
Os.7402.1.S1_at--657--212Chr05:4307906..4307930 (25 bp)
ATTTGGGCCTTTTGTGAGGATCAGC
LOC_Os05g08010
Os.7402.1.S1_at--96--6631Chr05:4307849..4307873 (25 bp)
GTTGGTCTGCAACTTATTGTATCGT
LOC_Os05g08010
Os.7402.1.S1_at--803--2651Chr05:4307762..4307786 (25 bp)
AAGCGGCGTTTCTCCTTGTTAGAGT
LOC_Os05g08010
Os.7402.1.S1_at--168--6071Chr05:4307741..4307765 (25 bp)
GAGTTTGAGTTGTACCTGTTCTGAC
LOC_Os05g08010
Target Sequence 
GTGTGACTAACGAACTGCTGTATGAGAAGATAAACTCCAAGTACAAATCTAGCGAGTTCTGCTATGTGGTCATAGTTCAC
CTGGATTGCAATTTGATTTACTATATTACTAGAGACTACACGCTGATGGCATATGACATGGATCATAAGGAGTCACGTGT
TATTCAAGCTCTTGGGTCAGATTGTATACTGGAGTGTCTTCCCTATGTTCCACTCTATGCAGAAACACTGTCCAATAGGA
GCTAAGTCAGTTTCTTTGTAGTACACCAGTGTTGCTTGGCATTTGTTCCCATGAAATGATATTTAGACCTTTTTCAAAAT
CTATGTATTTGGGCCTTTTGTGAGGATCAGCATGAACACATTTCCAATTGTCATTTGTGAAATGTTGGTCTGCAACTTAT
TGTATCGTATGATTAATGCTGATGTTTGTTAGCTATGATGTTTGTTAGAATGTAAAAATTNCAGTATGTNNAAGCGGCGT
TTCTCCTTGTTAGAGTTTGAGTTGTACCTGTTCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis