Browse Element(s) Details


Os.7540.2.S1_at

Description gb:AK072674.1
DB_XREF= gi:32982697
TID=Os.7540.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134J17, full insert sequence.
FL= gb:AK072674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2155011/11Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21510Os.48959.1.S1_at7/113+12265627..12270343Protein kinase domain containing protein, expressed
LOC_Os03g21520Os.56303.1.S1_at11/113+12270650..12275674expressed protein
LOC_Os03g21530Os.19112.2.S1_x_at11/113+12278547..12282414expressed protein
LOC_Os03g21540Os.24926.1.S1_at10/113+12287498..12290693protein kinase family protein, putative, expressed
LOC_Os03g21550Os.7540.2.S1_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S2_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S1_a_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21560Os.20465.1.S1_at10/113+12299746..12300629possible Photosystem II reaction center Psb27 protein, putative, expressed
LOC_Os03g21570Os.54916.1.S1_at2/113+12301267..12302416hypothetical protein
LOC_Os03g21580OsAffx.12972.1.S1_at10/113+12303212..12304516hypothetical protein
LOC_Os03g21580Os.13521.1.S1_at1/113+12303212..12304516hypothetical protein
LOC_Os03g21590OsAffx.25183.1.S1_at11/113+12306468..12309410expressed protein
LOC_Os03g21590OsAffx.25183.1.S1_s_at11/113+12306468..12309410expressed protein
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein
LOC_Os03g21610OsAffx.12973.1.S1_at10/113+12317137..12318638hypothetical protein
LOC_Os03g21620Os.13521.1.S1_at11/113+12319013..12323097Serine/threonine-protein kinase AtPK19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7540.2.S1_at--766--5391Chr03:12295235..12295259 (25 bp)
GAACCAGTTAGCAGTGAACACCTAT
LOC_Os03g21550
Os.7540.2.S1_at--1047--311Chr03:12295296..12295320 (25 bp)
ATACTGTCAGTGCTAGCCTGGTCAT
LOC_Os03g21550
Os.7540.2.S1_at--92--10431Chr03:12295320..12295344 (25 bp)
TTATCAGTGTTATAATGGCCCTGTC
LOC_Os03g21550
Os.7540.2.S1_at--580--8411Chr03:12295336..12295360 (25 bp)
GGCCCTGTCAGGATATATGCACCAC
LOC_Os03g21550
Os.7540.2.S1_at--1039--211Chr03:12295435..12295459 (25 bp)
ATTTGTGTTTTGAGCATGGCGGTCA
LOC_Os03g21550
Os.7540.2.S1_at--1016--4671Chr03:12295453..12295477 (25 bp)
GCGGTCACATGTTATGCCTAAGGAT
LOC_Os03g21550
Os.7540.2.S1_at--848--6751Chr03:12295531..12295555 (25 bp)
GTTACTCCGTGGTGGATTTCAGCAT
LOC_Os03g21550
Os.7540.2.S1_at--1062--10191Chr03:12295558..12295582 (25 bp)
TATTTGTTTGTAATCAGCCTTTCAC
LOC_Os03g21550
Os.7540.2.S1_at--966--3131Chr03:12295583..12295607 (25 bp)
AATTATTTCTTGTCAGCCTTCTATA
LOC_Os03g21550
Os.7540.2.S1_at--380--10171Chr03:12295606..12295630 (25 bp)
TATCATTTTTCCTTGTACCAGCGGC
LOC_Os03g21550
Os.7540.2.S1_at--15--6271Chr03:12295648..12295672 (25 bp)
GATGTTTTGTAGCTTACTCCTTTTG
LOC_Os03g21550
Target Sequence 
GAACCAGTTAGCAGTGAACACCTATGGTGATATTTGATGGTGTTTGGACTTGTGTCTGAATATACTGTCAGTGCTAGCCT
GGTCATTATCAGTGTTATAATGGCCCTGTCAGGATATATGCACCACAATGTGGGATTTTTCTGTTGATTGAACGGATGTA
GAGCTGTAGCCTGTAAGGAGATCAACAAATTAGATTCATCATTTGTGTTTTGAGCATGGCGGTCACATGTTATGCCTAAG
GATTATCATGTGCAACAAAGGGTTAACATCACAATTTGATAAAAAGCAAGTGAAATGTTACTCCGTGGTGGATTTCAGCA
TTTTATTTGTTTGTAATCAGCCTTTCACAATTATTTCTTGTCAGCCTTCTATATCATTTTTCCTTGTACCAGCGGCTTGT
TGACAATGTTTGTGATGTTTTGTAGCTTACTCCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7540.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis