Browse Element(s) Details


Os.7588.1.S1_at

Description gb:CR289174
DB_XREF= gi:44675740
DB_XREF=CR289174
CLONE=p634c11p5
TID=Os.7588.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0071K18.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3269010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32630OsAffx.25007.1.S1_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_s_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_at1/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32640NANA10+16765789..16769121retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32649Os.27691.1.S1_x_at1/1110+16771508..16775994retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32658Os.27691.2.S1_x_at2/1110+16776246..16777172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32670NANA10+16778619..16779059hypothetical protein
LOC_Os10g32680Os.17506.1.S1_at10/1110+16782614..16786056Uncharacterized conserved protein, putative, expressed
LOC_Os10g32690Os.7588.1.S1_at10/1110+16786925..16791317expressed protein
LOC_Os10g32700Os.32630.1.S1_at11/1110+16787898..16790429hypersensitive-induced response protein, putative, expressed
LOC_Os10g32710Os.12790.1.S1_at11/1110+16791253..16795343WD-40 repeat protein, putative, expressed
LOC_Os10g32720OsAffx.8037.1.S1_s_at11/1110+16802532..16803314AWPM-19-like family protein, expressed
LOC_Os10g32730Os.8788.1.S1_at11/1110+16803761..16808452HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os10g32740Os.46668.1.S1_at11/1110+16811397..16816430von Willebrand factor type A domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7588.1.S1_at--606--8011Chr10:16787310..16787334 (25 bp)
GGAGGAACACCCCTACTGATGCATC
LOC_Os10g32690
Os.7588.1.S1_at--438--9631Chr10:16790841..16790865 (25 bp)
TCAGGTACTTTGACCCTTGTTTCTA
LOC_Os10g32690
Os.7588.1.S1_at--604--10791Chr10:16790857..16790881 (25 bp)
TTGTTTCTACCATCTGCATTTGCCA
LOC_Os10g32690
Os.7588.1.S1_at--953--9051Chr10:16790871..16790895 (25 bp)
TGCATTTGCCAAGTGATTTCTCCTC
LOC_Os10g32690
Os.7588.1.S1_at--955--7391Chr10:16790883..16790907 (25 bp)
GTGATTTCTCCTCAAGGCATCGGAA
LOC_Os10g32690
Os.7588.1.S1_at--87--4971Chr10:16790899..16790923 (25 bp)
GCATCGGAAATTCGGTTTTGTCCAT
LOC_Os10g32690
Os.7588.1.S1_at--788--10031Chr10:16791012..16791036 (25 bp)
TAGAGTATCTGTCTGTTTTGGCCGC
LOC_Os10g32690
Os.7588.1.S1_at--974--4131Chr10:16791038..16791062 (25 bp)
CGCGTCAGAGCCGTGCACAGAAATT
LOC_Os10g32690
Os.7588.1.S1_at--447--8291Chr10:16791178..16791202 (25 bp)
GGCTTGAGTCAAATCTTTGGGTCAT
LOC_Os10g32690
Os.7588.1.S1_at--969--9791Chr10:16791208..16791232 (25 bp)
TAAGCGTTTTGCCTATGACCTGAAT
LOC_Os10g32690
Os.7588.1.S1_at--170--8451NONE
TGGCCAGGCCCTATCAAATTGATCG
NONE
Target Sequence 
GGAGGAACACCCCTACTGATGCATCCCCTCTTCGCAGCTACAATAATAGGAGAATTGGCTACTGAGGCAAAGAAAGGATA
AAATCAGGTACTTTGACCCTTGTTTCTACCATCTGCATTTGCCAAGTGATTTCTCCTCAAGGCATCGGAAATTCGGTTTT
GTCCATTTGTTAGTTGGCGATGGAAGCAAAGGTAGTTTGTCATTTAGTCAAATGGTTAAGTTAGTTGGCGATGGAAGCAA
AGGCAGTTTGTGTTTAGAGTATCTGTCTGTTTTGGCCGCTCGCGTCAGAGCCGTGCACAGAAATTCGCTGAAGGTGTTAA
AATTTAGTAGACAACTCTAAATTCGGTTGAAAGCAAGACGATTGTAATTATGGATATGGATAATAACTGATAGGGTGGTT
ATTGTAAGATTATTGTAAGGGGCTTGAGTCAAATCTTTGGGTCATATCAATAAGCGTTTTGCCTATGACCTGAATTGGCC
AGGCCCTATCAAATTGATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis