Browse Element(s) Details


Os.7612.1.S1_at

Description gb:AK120562.1
DB_XREF= gi:37990185
TID=Os.7612.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Bowman-Birk serine protease inhibitor (OSJNBb0081B07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132J02, full insert sequence.
FL= gb:AK120562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6084010/11Bowman-Birk serine protease inhibitor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60800Os.26905.2.S1_x_at11/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60800Os.26905.1.A1_at9/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60810Os.44937.1.S1_at11/113+34484417..34486932Protein kinase domain containing protein, expressed
LOC_Os03g60820Os.6533.1.S1_at11/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60820Os.5150.1.S1_at10/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60830Os.35344.3.S1_x_at6/113+34502382..34503607hypothetical protein
LOC_Os03g60830Os.35344.18.S1_x_at5/113+34502382..34503607hypothetical protein
LOC_Os03g60830OsAffx.22940.5.S1_x_at3/113+34502382..34503607hypothetical protein
LOC_Os03g60840Os.7612.1.S1_at10/113+34506004..34507021Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os03g60850Os.27063.1.S1_at11/113+34513269..34515907POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7612.1.S1_at--1070--4651Chr03:34506474..34506498 (25 bp)
GCGTGCAAGAGCTGCGTCAAGTCCA
LOC_Os03g60840
Os.7612.1.S1_at--410--7811Chr03:34506430..34506454 (25 bp)
GGTCTACCAGTGCATGGACCGCATC
LOC_Os03g60840
Os.7612.1.S1_at--1064--5431Chr03:34506318..34506342 (25 bp)
GACCGGCCTTACTTAATTAAGAGTG
LOC_Os03g60840
Os.7612.1.S1_at--623--6971Chr03:34506238..34506262 (25 bp)
GTACCTACTGTACTGGAGGTGATTG
LOC_Os03g60840
Os.7612.1.S1_at--933--6811Chr03:34506193..34506217 (25 bp)
GTTTATGTGCTGGAATCAGCCTCCA
LOC_Os03g60840
Os.7612.1.S1_at--387--8211Chr03:34506182..34506206 (25 bp)
GGAATCAGCCTCCAGTTTTCATCTC
LOC_Os03g60840
Os.7612.1.S1_at--923--3791Chr03:34506157..34506181 (25 bp)
CTCGCTCTGCTAACTACGGAGTAAT
LOC_Os03g60840
Os.7612.1.S1_at--490--7431Chr03:34506131..34506155 (25 bp)
GTGTAGAGATTACTCGCCGAGCTAT
LOC_Os03g60840
Os.7612.1.S1_at--1048--5911Chr03:34506113..34506137 (25 bp)
GAGCTATATGTACAAACGGCCTGTG
LOC_Os03g60840
Os.7612.1.S1_at--1068--2371Chr03:34506100..34506124 (25 bp)
AAACGGCCTGTGTGATGAGACGAAA
LOC_Os03g60840
Os.7612.1.S1_at--243--7991Chr03:34506004..34506028 (25 bp)
GGATGCGTGCTTGGTTCATATTTTC
NONE
Target Sequence 
GCGTGCAAGAGCTGCGTCAAGTCCAGCCTCAGCGTCTCCCCGCCGGTCTACCAGTGCATGGACCGCATCCCCAACCTCTG
CCAGCGCCGCTGCACCGCCGCCGCCCGCTGACCTCCCCCGCCGCCCATCTGACCCGACCCACCGGCCACCGCCACCGACC
GGCCTTACTTAATTAAGAGTGGTTTTTGTTTGTCCCTTTTTTTTTTTGGAAAAGCTGAAGAAGTGAAGAAGCAGTAGTAC
CTACTGTACTGGAGGTGATTGGAGGGAGCAGCTGGTTTCAGGTTTATGTGCTGGAATCAGCCTCCAGTTTTCATCTCCTC
GCTCTGCTAACTACGGAGTAATTGTGTAGAGATTACTCGCCGAGCTATATGTACAAACGGCCTGTGTGATGAGACGAAAT
TGTAATGGTAAATTTTTTTTCACCTTNANNTGTTGGATATGAGTGAAATTGTTGCTAGCGAAATGATGATGGATGCGTGC
TTGGTTCATATTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis