Browse Element(s) Details


Os.7632.1.S1_at

Description gb:AK110420.1
DB_XREF= gi:32995629
TID=Os.7632.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-166-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-166-A03, full insert sequence.
FL= gb:AK110420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4137011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41320NANA5+24125452..24125910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.1.S1_x_at11/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.3.S1_x_at5/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.2.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.5.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41340Os.25048.1.S1_at1/115+24137443..24138656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41350NANA5+24140664..24142825retrotransposon, putative, centromere-specific
LOC_Os05g41360OsAffx.4587.1.S1_at11/115+24143999..24145518expressed protein
LOC_Os05g41370Os.7632.1.S1_at11/115+24147487..24151578Protein kinase domain containing protein, expressed
LOC_Os05g41380OsAffx.27274.1.S1_at8/115+24153958..24154514expressed protein
LOC_Os05g41390Os.24881.1.A1_at7/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41390OsAffx.27284.1.S1_s_at3/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41400OsAffx.4588.1.S1_at11/115+24160946..24162463Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os05g41410OsAffx.19695.1.S1_at10/115+24163567..24165704hypothetical protein
LOC_Os05g41410OsAffx.29554.1.S1_at1/115+24163567..24165704hypothetical protein
LOC_Os05g41420Os.56924.1.S1_at11/115+24171422..24173706nodulin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7632.1.S1_at--781--5911Chr05:24151075..24151099 (25 bp)
GAGCTTCTGCGGTGCATCCACGTGG
LOC_Os05g41370
Os.7632.1.S1_at--61--7131Chr05:24151156..24151180 (25 bp)
GTCATGCTCAACAGCCGCTCGGTCA
LOC_Os05g41370
Os.7632.1.S1_at--996--8051Chr05:24151277..24151301 (25 bp)
GGAGCACGGATCACGAGGTTCCTAC
LOC_Os05g41370
Os.7632.1.S1_at--1055--1871Chr05:24151289..24151313 (25 bp)
ACGAGGTTCCTACGGCTGCTCGATA
LOC_Os05g41370
Os.7632.1.S1_at--346--3931Chr05:24151326..24151350 (25 bp)
CGGCGCTTCTGTCTCTGAACTAGAG
LOC_Os05g41370
Os.7632.1.S1_at--1151--8711Chr05:24151335..24151359 (25 bp)
TGTCTCTGAACTAGAGCCCCGGTGA
LOC_Os05g41370
Os.7632.1.S1_at--212--5671Chr05:24151358..24151382 (25 bp)
GACATCGGAGATTCGGAGGACTGAC
LOC_Os05g41370
Os.7632.1.S1_at--376--2451Chr05:24151418..24151442 (25 bp)
AAAATTTGTTGCTCGTTTTGCATTC
LOC_Os05g41370
Os.7632.1.S1_at--309--9071Chr05:24151463..24151487 (25 bp)
TGCATTTCTGTATGCCGTTCAGTGT
LOC_Os05g41370
Os.7632.1.S1_at--892--571Chr05:24151474..24151498 (25 bp)
ATGCCGTTCAGTGTTGGAGTAGTTA
LOC_Os05g41370
Os.7632.1.S1_at--869--5771Chr05:24151544..24151568 (25 bp)
GACGAGCTTAGCAATTCAAGTGGTT
LOC_Os05g41370
Target Sequence 
GAGCTTCTGCGGTGCATCCACGTGGGGCTCCTCTGCGTGCAGGAGGACCCGCAGCTCCGCCCCGGCATGGCGGCAGTCGT
CGTCATGCTCAACAGCCGCTCGGTCACGCTGCCGGCGCCCTCGGCGCCGGCGTTCGTCTCCGCGAGCCGTGGGATCGGCG
GAAGCCCGCCGCCGGCGGCGGCGGCGGGAGATGCGCCGGCGAGGAGCACGGATCACGAGGTTCCTACGGCTGCTCGATAG
CCGTCGATCAANCGGCGCTTCTGTCTCTGAACTAGAGCCCCGGTGACATCGGAGATTCGGAGGACTGACGGCTGGGCCCG
GCTTNTGTTTCTGCTNTGAATTTGAAAATTTGTTGCTCGTTTTGCATTCAAAATTTCTCTCGGATTTAATGCATTTCTGT
ATGCCGTTCAGTGTTGGAGTAGTTAAGTGGATATGAAAATGTAATGACGGCTTTGTAATTTANATTTTTCGACGAGCTTA
GCAATTCAAGTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis