Browse Element(s) Details


Os.7679.1.S1_at

Description gb:AF432204.1
DB_XREF= gi:16904060
TID=Os.7679.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.7679 (NCBI UniGene Cluster)
UG_TITLE=Hypothetical protein (rgi97) mRNA, complete cds
DEF=Oryza sativa hypothetical protein (rgi97) mRNA, complete cds.
FL= gb:AF432204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2399011/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23970OsAffx.5423.1.S1_at11/117+13565490..13566086expressed protein
LOC_Os07g23980Os.26542.1.A1_at11/117+13571774..13575459retrotransposon, putative, centromere-specific
LOC_Os07g23980OsAffx.25367.1.S1_at1/117+13571774..13575459retrotransposon, putative, centromere-specific
LOC_Os07g23990Os.7679.1.S1_at11/117+13587797..13602928tetratricopeptide repeat, putative, expressed
LOC_Os07g23990OsAffx.4222.1.S1_at2/117+13587797..13602928tetratricopeptide repeat, putative, expressed
LOC_Os07g24000Os.12221.1.S1_at11/117+13606022..13607150plasma membrane associated protein, putative, expressed
LOC_Os07g24010NANA7+13609381..13609845hypothetical protein
LOC_Os07g24020Os.26886.3.S1_x_at4/117+13610131..13614779transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g24020OsAffx.22421.1.S1_at1/117+13610131..13614779transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g24030OsAffx.5424.1.S1_at11/117+13623190..13623438hypothetical protein
LOC_Os07g24040Os.55085.1.S1_at1/117+13626518..13633387expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7679.1.S1_at--560--3871Chr07:13601187..13601211 (25 bp)
CTGTCTCCTTTGCTGAAGTTGTTTC
LOC_Os07g23990
Os.7679.1.S1_at--144--10291Chr07:13601195..13601219 (25 bp)
TTTGCTGAAGTTGTTTCCTCTGGCA
LOC_Os07g23990
Os.7679.1.S1_at--458--6851Chr07:13601207..13601231 (25 bp)
GTTTCCTCTGGCAACTAATAAGTAT
LOC_Os07g23990
Os.7679.1.S1_at--5--9791Chr07:13601225..13601249 (25 bp)
TAAGTATTGCAAGTTTAGCCAAAGC
LOC_Os07g23990
Os.7679.1.S1_at--1151--10211Chr07:13601254..13601278 (25 bp)
TATTGACTTTTCCATTATTACCCAA
LOC_Os07g23990
Os.7679.1.S1_at--713--10091Chr07:13601290..13601314 (25 bp)
TATGGATCTCCAACTGAAACATGAT
LOC_Os07g23990
Os.7679.1.S1_at--337--7171Chr07:13601327..13601351 (25 bp)
GTCTGAGCTTTTCGAAAGCAGAGCC
LOC_Os07g23990
Os.7679.1.S1_at--1091--2711Chr07:13601342..13601366 (25 bp)
AAGCAGAGCCTTGTGTCTTCAGTGT
LOC_Os07g23990
Os.7679.1.S1_at--627--2891Chr07:13602618..13602641 (24 bp)
AAGGTGTTGGCAATTCTGTGTAGAA
LOC_Os07g23990
Os.7679.1.S1_at--1152--5091Chr07:13602703..13602727 (25 bp)
GCAACAATACTTGACAAACCGATTT
LOC_Os07g23990
Os.7679.1.S1_at--1124--3751Chr07:13602848..13602872 (25 bp)
CTCGTGGTTTTTGTGAGAAGCTAAC
LOC_Os07g23990
Target Sequence 
CTGTCTCCTTTGCTGAAGTTGTTTCCTCTGGCAACTAATAAGTATTGCAAGTTTAGCCAAAGCATAATATTGACTTTTCC
ATTATTACCCAAAAGAAAATTTNTATGGATCTCCAACTGAAACATGATAGAATTTCAATTGTCTGAGCTTTTCGAAAGCA
GAGCCTTGTGTCTTCAGTGTTTCAGGTTTTGGTGTTTNGCACATACGACATTCCTCCATCCGACATTNTGAAAGGTCAAA
TGCATATGTTTTCAGTTCAATAAGGTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAGAGTCA
GAACAGATAGAGGGTATCGAAGTGTTAGCAACAATACTTGACAAACCGATTTTTTGTTCAATTTTGTTAGACTGAAAGGA
ATATTTTNTTAGATTTTTGGGGCTAAAATTTTGGGTATGAAACTTACCACTTAGTTTTTTTTTTTNNGTTGGCTGCTTGC
ATCCAACAATTATATCTCGTGGTTTTTGTGAGAAGCTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis