Browse Element(s) Details


Os.7680.1.S1_at

Description gb:AU101784
DB_XREF= gi:9866034
DB_XREF=AU101784
CLONE=S13888
TID=Os.7680.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7680 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1606_D04.4 (OJ1606_D04.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0402010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03980OsAffx.19018.1.S1_x_at4/117+1677411..1677914hypothetical protein
LOC_Os07g03980Os.38899.1.S1_x_at1/117+1677411..1677914hypothetical protein
LOC_Os07g03990OsAffx.28254.1.S1_at11/117+1681486..1684908Leucine Rich Repeat family protein, expressed
LOC_Os07g04000OsAffx.28255.1.S1_at11/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04000Os.45971.1.S1_x_at1/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04010OsAffx.28256.1.S1_at11/117+1691209..1693218lectin receptor kinase 7, putative
LOC_Os07g04020Os.7680.1.S1_at10/117+1698060..1699336expressed protein
LOC_Os07g04029Os.51605.1.S1_at9/117+1699591..1700115NA
LOC_Os07g04040Os.37089.1.S1_at11/117+1710501..1712797Protein kinase domain containing protein, expressed
LOC_Os07g04050OsAffx.22502.2.S1_at11/117+1714160..1715080hypothetical protein
LOC_Os07g04050Os.5967.1.S1_x_at3/117+1714160..1715080hypothetical protein
LOC_Os07g04050OsAffx.22502.1.S1_x_at3/117+1714160..1715080hypothetical protein
LOC_Os07g04050Os.53420.1.S1_x_at2/117+1714160..1715080hypothetical protein
LOC_Os07g04060OsAffx.16074.1.S1_at11/117+1715822..1718290expressed protein
LOC_Os07g04070OsAffx.5199.1.S1_at11/117+1721014..1721718hypothetical protein
LOC_Os07g04070OsAffx.5199.1.S1_x_at11/117+1721014..1721718hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7680.1.S1_at--847--8011Chr07:1698754..1698778 (25 bp)
GGAGGAGCCTGATGAAACCATTGGA
LOC_Os07g04020
Os.7680.1.S1_at--19--1071Chr07:1698842..1698866 (25 bp)
AGGGTGTGCATGTCCTGTGGCCACT
LOC_Os07g04020
Os.7680.1.S1_at--749--2851Chr07:1698879..1698903 (25 bp)
AAGTGCCCATTGTGCCACAGGTGAT
LOC_Os07g04020
Os.7680.1.S1_at--582--2391Chr07:1699021..1699045 (25 bp)
AAACTACAAGCCATTGAGCTGGAAA
LOC_Os07g04020
Os.7680.1.S1_at--468--7731Chr07:1699055..1699079 (25 bp)
GGTGGCATCATCCTTGATCCATAAT
LOC_Os07g04020
Os.7680.1.S1_at--612--9211Chr07:1699082..1699106 (25 bp)
TCCAACTCATGGCAGATCACTTCAA
LOC_Os07g04020
Os.7680.1.S1_at--91--8271Chr07:1699092..1699116 (25 bp)
GGCAGATCACTTCAACATTGTGCAA
LOC_Os07g04020
Os.7680.1.S1_at--729--4791Chr07:1699132..1699156 (25 bp)
GCTCCTCTGCTTGTTCATCTGAATT
LOC_Os07g04020
Os.7680.1.S1_at--471--3711Chr07:1699184..1699208 (25 bp)
CTAGTAGCTACTTCCTCCTTTTGAT
LOC_Os07g04020
Os.7680.1.S1_at--587--4311Chr07:1699200..1699224 (25 bp)
CCTTTTGATTTCTATCTAGGCCAGA
LOC_Os07g04020
Os.7680.1.S1_at--692--2691NONE
AAGCTGCATGCTTGTTGTACATTTA
NONE
Target Sequence 
GGAGGAGCCTGATGAAACCATTGGAGAGAAGATGGAGATGGAGATGGAAGGGAGGAGGCTGATAGGNTCAAGGCCACCAA
GGTGTGAGAGGGTGTGCATGTCCTGTGGCCACTGTGAGGCAGTNCAAGTGCCCATTGTGCCACAGGTGATTCAGAAGACA
CAAACCAAAGCTGCTGCTGCTGCTGCTGCCGAGCAAGAACAGCATGTGGTNGTNGAGTGCTACTGCCATCAGTGCTGCNA
GTGTTCACCTACAGGGTGAATGGNCTCTCAAACTACAAGCCATTGAGCTGGAAATGCAAGTGTGGTGGCATCATCCTTGA
TCCATAATGTTCCAACTCATGGCAGATCACTTCAACATTGTGCAAAAATGTAAACAACTTGCTCCTCTGCTTGTTCATCT
GAATTTTTCTTTCTTNGTTGTTCTACTACTAGCTAGTAGCTACTTCCTCCTTTTGATTTCTATCTAGGCCAGAGATTGAA
AATGTGGGGGGATGGAGATGAAAAGCTGCATGCTTGTTGTACATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis