Browse Element(s) Details


Os.7711.1.S1_at

Description gb:AK099421.1
DB_XREF= gi:32984630
TID=Os.7711.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0008A05.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013007O07, full insert sequence.
FL= gb:AK061323.1 gb:AK099421.1 gb:AK109353.2 gb:AK105880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1837011/11Uncharacterized ACR, COG1678 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18330OsAffx.18286.1.S1_at11/1110+8980933..8981682hypothetical protein
LOC_Os10g18340Os.12787.1.S1_at11/1110+8984080..8984965expressed protein
LOC_Os10g18350NANA10+8987788..8991340hypothetical protein
LOC_Os10g18360Os.1709.1.S1_x_at11/1110+8991814..8996558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18364Os.11716.1.S1_at11/1110+8999272..9005164expressed protein
LOC_Os10g18370Os.7711.1.S1_at11/1110+9006514..9007842Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g18380OsAffx.30446.1.S1_at11/1110+9010894..9011933hypothetical protein
LOC_Os10g18390OsAffx.2524.1.S1_at9/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_x_at2/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18390OsAffx.19264.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18400Os.46702.1.S1_at11/1110+9017673..9025056Beta-galactosidase precursor, putative, expressed
LOC_Os10g18410OsAffx.18289.1.S1_at10/1110+9030786..9031094hypothetical protein
LOC_Os10g18420OsAffx.30226.2.S1_x_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.2.S1_s_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.442.1.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.4.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_x_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.24587.1.S1_x_at1/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7711.1.S1_at--574--7711Chr10:9007383..9007407 (25 bp)
GGGTGAGGGACTTCCGCTTCTTCGA
LOC_Os10g18370
Os.7711.1.S1_at--846--7471Chr10:9007562..9007586 (25 bp)
GTGTGGTGACTGATTACTTCTCAAG
LOC_Os10g18370
Os.7711.1.S1_at--750--6551Chr10:9007573..9007597 (25 bp)
GATTACTTCTCAAGGGTGACCATTA
LOC_Os10g18370
Os.7711.1.S1_at--153--3071Chr10:9007617..9007641 (25 bp)
AATCTCTTAATTAACTCGCAAGTAA
LOC_Os10g18370
Os.7711.1.S1_at--42--10451Chr10:9007670..9007694 (25 bp)
TTAGGCTTTTAGTCATCACGGTAGG
LOC_Os10g18370
Os.7711.1.S1_at--608--9591Chr10:9007679..9007703 (25 bp)
TAGTCATCACGGTAGGTTTAAAGAG
LOC_Os10g18370
Os.7711.1.S1_at--1111--6131Chr10:9007701..9007725 (25 bp)
GAGGGTTGTATTTGTATACTCTGTA
LOC_Os10g18370
Os.7711.1.S1_at--254--6891Chr10:9007714..9007738 (25 bp)
GTATACTCTGTATCTTGTACTCTTA
LOC_Os10g18370
Os.7711.1.S1_at--648--431Chr10:9007725..9007749 (25 bp)
ATCTTGTACTCTTATCGTTTTGCCC
LOC_Os10g18370
Os.7711.1.S1_at--723--11Chr10:9007738..9007762 (25 bp)
ATCGTTTTGCCCACCACTACGCGAA
LOC_Os10g18370
Os.7711.1.S1_at--91--3251Chr10:9007788..9007812 (25 bp)
CAACGCATACACTACTTCATACTTT
LOC_Os10g18370
Target Sequence 
GGGTGAGGGACTTCCGCTTCTTCGACGGCTTCTGCGGGTGGGAGAGGGAGCAGCTGCGCGACGAGGTGCGCGCGGGCTTG
TGGCGCGTGGCGGCGTGCAGCCCCGCCGTGCTGGGCCTCGCCACCGTCGTCAAGGGCGGACTCTGGGAGGAGGTGCAGGG
CCTCGTCGGAGAGAGGAGGGTGTGGTGACTGATTACTTCTCAAGGGTGACCATTATGTAATTAATTAATTAATTAATCTC
TTAATTAACTCGCAAGTAAAGTATTTACTCCTTTCAGATTAATGATTTTAGGCTTTTAGTCATCACGGTAGGTTTAAAGA
GGGTTGTATTTGTATACTCTGTATCTTGTACTCTTATCGTTTTGCCCACCACTACGCGAACACACCTCGATGCCCTTCTC
GTCTCCAACGCATACACTACTTCATACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis