Browse Element(s) Details


Os.7742.1.S1_a_at

Description gb:AK100005.1
DB_XREF= gi:32985214
TID=Os.7742.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.7742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135O16, full insert sequence.
FL= gb:AK100005.1 gb:AK068293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4942011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49380Os.14415.1.S1_a_at11/113+28056077..28062460Lipoxygenase 3, putative, expressed
LOC_Os03g49400Os.32159.1.S1_a_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49400Os.49792.1.S1_x_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49410OsAffx.3557.1.S1_at10/113+28074526..28075312hypothetical protein
LOC_Os03g49410OsAffx.27323.1.S1_at1/113+28074526..28075312hypothetical protein
LOC_Os03g49420Os.7742.1.S1_a_at11/113+28077890..28086288HEAT repeat family protein, expressed
LOC_Os03g49430Os.16659.1.S2_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49430Os.16659.1.S1_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49440Os.5147.1.S1_at11/113+28092272..28095500Phosphatase, putative, expressed
LOC_Os03g49450OsAffx.25642.1.S1_at6/113+28097080..28098412hypothetical protein
LOC_Os03g49464Os.24106.3.S1_at6/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.46481.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464OsAffx.28164.2.S1_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.52574.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49480Os.24106.2.A1_at9/113+28109221..28110521GNS1/SUR4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0030089cellular_componentphycobilisome
GO:0008565molecular_functionprotein transporter activity
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7742.1.S1_a_at--283--5511Chr03:28084894..28084918 (25 bp)
GAACAACTCTGTACGATGCTTGAGA
LOC_Os03g49420
Os.7742.1.S1_a_at--13--6491Chr03:28085063..28085087 (25 bp)
GATAGGGAGCTTTTGGGTCATAACA
LOC_Os03g49420
Os.7742.1.S1_a_at--867--7691Chr03:28085077..28085101 (25 bp)
GGGTCATAACAACCAGTATCTTCCA
LOC_Os03g49420
Os.7742.1.S1_a_at--523--2331Chr03:28085101..28085125 (25 bp)
AAAGATTGTCTCTATTTTTGCGGAG
LOC_Os03g49420
Os.7742.1.S1_a_at--728--1411Chr03:28085863..28085887 (25 bp)
AGACAGCTTCAGACTACATTGCCTC
LOC_Os03g49420
Os.7742.1.S1_a_at--1078--51Chr03:28085880..28085904 (25 bp)
ATTGCCTCCTTCAGTACTGGCGTCA
LOC_Os03g49420
Os.7742.1.S1_a_at--194--7191Chr03:28085946..28085970 (25 bp)
GTCTGTGTTGTCATCATAGCTGAAC
LOC_Os03g49420
Os.7742.1.S1_a_at--271--5191Chr03:28085981..28086005 (25 bp)
GCAATGTTGAGCATGTGGCCTTCAC
LOC_Os03g49420
Os.7742.1.S1_a_at--1068--8451Chr03:28085996..28086020 (25 bp)
TGGCCTTCACATATTGCCTTCTTTT
LOC_Os03g49420
Os.7742.1.S1_a_at--363--10671Chr03:28086050..28086074 (25 bp)
TTCCTGGAGTTTGTGCAGCATACAA
LOC_Os03g49420
Os.7742.1.S1_a_at--1052--5051Chr03:28086064..28086088 (25 bp)
GCAGCATACAAATGCCCTGAGCTTT
LOC_Os03g49420
Target Sequence 
GAACAACTCTGTACGATGCTTGAGAAGTCAGATAGGGAGCTTTTGGGTCATAACAACCAGTATCTTCCAAAGATTGTCTC
TATTTTTGCGGAGATATTATGTGCGGGTAAGGATCTGGCAACAGAACAAACTTTTAGTAAGATGGTTAATTTGCTAAGAC
AGCTTCAGACTACATTGCCTCCTTCAGTACTGGCGTCAACATGGTCTTCTTTGCAGCCGCAGCAACAGCTTGCCCTACAG
TCTGTGTTGTCATCATAGCTGAACAGTAACCTCAGCAATGTTGAGCATGTGGCCTTCACATATTGCCTTCTTTTTTGGGT
TTTCATGTGGTTTTGTGCTTGGGTTCCTGGAGTTTGTGCAGCATACAAATGCCCTGAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7742.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis