Browse Element(s) Details


Os.7853.2.S1_x_at

Description gb:AK061108.1
DB_XREF= gi:32971126
TID=Os.7853.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0699H05.24 (P0699H05.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-C06, full insert sequence.
FL= gb:AK061108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5845910/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58420Os.3766.1.S1_at11/111+34093832..34094932AP2 domain containing protein, expressed
LOC_Os01g58430OsAffx.23839.1.S1_at11/111+34097009..34097629hypothetical protein
LOC_Os01g58440Os.50619.1.S1_x_at11/111+34105154..34106470expressed protein
LOC_Os01g58440Os.50619.1.S1_at11/111+34105154..34106470expressed protein
LOC_Os01g58450OsAffx.9495.1.S1_at10/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58450OsAffx.21754.1.S1_x_at2/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58459Os.7853.1.S1_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.1.S2_a_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.2.S1_x_at10/111+34117138..34120938expressed protein
LOC_Os01g58459Os.51796.1.S1_at7/111+34117138..34120938expressed protein
LOC_Os01g58470Os.27717.1.S1_a_at11/111+34130010..34132240expressed protein
LOC_Os01g58480OsAffx.23840.1.S1_at11/111+34136537..34137863hypothetical protein
LOC_Os01g58490OsAffx.23841.1.S1_at11/111+34138781..34139359hypothetical protein
LOC_Os01g58500Os.36178.1.S1_at10/111+34139763..34141975expressed protein
LOC_Os01g58510OsAffx.23842.1.S1_at11/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58510OsAffx.23842.3.S1_x_at1/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58520Os.25235.1.A1_at11/111+34143539..34145585Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7853.2.S1_x_at--331--551Chr01:34120660..34120684 (25 bp)
ATCCGGCGTGAGAGCGACGGACCCC
LOC_Os01g58459
Os.7853.2.S1_x_at--180--4091Chr01:34120684..34120708 (25 bp)
CGACGCCCCTGATGATGTATTCAAT
LOC_Os01g58459
Os.7853.2.S1_x_at--89--3071Chr01:34120706..34120730 (25 bp)
AATCTATTGACGGTTCCATTCTCGA
LOC_Os01g58459
Os.7853.2.S1_x_at--760--5691Chr01:34120714..34120738 (25 bp)
GACGGTTCCATTCTCGACGAAACAA
LOC_Os01g58459
Os.7853.2.S1_x_at--648--10191Chr01:34120724..34120748 (25 bp)
TTCTCGACGAAACAAGTAACCAAAT
LOC_Os01g58459
Os.7853.2.S1_x_at--284--7011Chr01:34120750..34120774 (25 bp)
GTACTCATATTACTCTTCTTCCAAT
LOC_Os01g58459
Os.7853.2.S1_x_at--788--9571Chr01:34120766..34120790 (25 bp)
TCTTCCAATTTGTTTTACATTCCGA
LOC_Os01g58459
Os.7853.2.S1_x_at--912--6211Chr01:34120809..34120833 (25 bp)
GATGAAATCAAACAATGGCTTGGAT
LOC_Os01g58459
Os.7853.2.S1_x_at--436--10871Chr01:34120834..34120858 (25 bp)
TTGGAATCAACTTCTTGAGGGCGTC
LOC_Os01g58459
Os.7853.2.S1_x_at--477--3071Chr01:34120838..34120862 (25 bp)
AATCAACTTCTTGAGGGCGTCATCC
LOC_Os01g58459
Os.7853.2.S1_x_at--436--10391Chr01:34120924..34120948 (25 bp)
TTTTGGCACCTGCTGAAACATTATT
NONE
Target Sequence 
ATCCGGCGTGAGAGCGACGGACCCCGACGCCCCTGATGATGTATTCAATCTATTGACGGTTCCATTCTCGACGAAACAAG
TAACCAAATAGTACTCATATTACTCTTCTTCCAATTTGTTTTACATTCCGAAAACTAGTAATTAATCGGGATGAAATCAA
ACAATGGCTTGGATTTGGAATCAACTTCTTGAGGGCGTCATCCGATAAGACTGGCCTTGCCTTCATACTTGTAGGTGTCT
TTTTAATAATGGAAAATTTTTCCGTTTTGGCACCTGCTGAAACATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7853.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis