Browse Element(s) Details


Os.7861.2.S1_s_at

Description gb:AK120578.1
DB_XREF= gi:37990201
TID=Os.7861.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135E03, full insert sequence.
FL= gb:AK120578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3503011/11IAP100, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34970OsAffx.7997.1.S1_at11/1110+18331944..18333566hypothetical protein
LOC_Os10g34980OsAffx.18522.1.S1_at11/1110+18334614..18335224hypothetical protein
LOC_Os10g34990Os.46656.1.A1_at11/1110+18336901..18337350ubiquitin fusion protein, putative, expressed
LOC_Os10g35000Os.2534.1.S1_at11/1110+18337596..18339724G-patch domain containing protein, expressed
LOC_Os10g35010Os.37979.1.S1_a_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35010Os.37979.2.S1_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35040Os.46331.1.S1_s_at11/1110+18367714..18370483Protein kinase domain containing protein, expressed
LOC_Os10g35050Os.2544.1.S1_s_at11/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35050OsAffx.9909.2.S1_x_at2/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35060Os.2540.1.S1_at11/1110+18373563..18376629Ser/Thr protein phosphatase family protein, expressed
LOC_Os10g35070Os.17491.1.S1_at5/1110+18378181..18381958Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35080OsAffx.18523.1.S1_at11/1110+18381976..18385830hypothetical protein
LOC_Os10g35090Os.46382.2.S1_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.1.S1_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.2.S2_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.4.S1_x_at2/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0045037biological_processprotein import into chloroplast stroma
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7861.2.S1_s_at--808--2751Chr10:18359635..18359659 (25 bp)
AAGAAAGATTTGTCCGCGGGCTTGG
LOC_Os10g35030
Os.7861.2.S1_s_at--147--3911Chr10:18359619..18359643 (25 bp)
CGGGCTTGGGCCTATTACATTAGGT
LOC_Os10g35030
Os.7861.2.S1_s_at--541--9831Chr10:18359476..18359500 (25 bp)
TAAAGATGCTCTATAGTGCCTATGC
LOC_Os10g35030
Os.7861.2.S1_s_at--629--2711Chr10:18358809..18358832 (24 bp)
AAGCTTGCGGCTTTGAATCAACTGA
LOC_Os10g35030
Os.7861.2.S1_s_at--839--3551Chr10:18358744..18358768 (25 bp)
CATCACAGATGTCAAGGCTCGAGTA
LOC_Os10g35030
Os.7861.2.S1_s_at--1000--8291Chr10:18358729..18358753 (25 bp)
GGCTCGAGTATTTCAGACCTACTAA
LOC_Os10g35030
Os.7861.2.S1_s_at--325--8891Chr10:18358692..18358716 (25 bp)
TGAGTTGGCTGCGACCCCAAAGAAG
LOC_Os10g35030
Os.7861.2.S1_s_at--37--6071Chr10:18358664..18358688 (25 bp)
GAGTTCCTCCAAGATATCTGCGAAG
LOC_Os10g35030
Os.7861.2.S1_s_at--981--3851Chr10:18358541..18358565 (25 bp)
CTGACCGCCTTGAAATCTGGGCAAA
LOC_Os10g35030
Os.7861.2.S1_s_at--281--10591Chr10:18358503..18358527 (25 bp)
TTCTCTTGGTGGCTCTATCTATATA
LOC_Os10g35030
Os.7861.2.S1_s_at--696--10171Chr10:18358454..18358478 (25 bp)
TATAATATTGCAGGCCCTATTCCTT
LOC_Os10g35030
Target Sequence 
AAGAAAGATTTGTCCGCGGGCTTGGGCCTATTACATTAGGTGGAGACAGTGATCATGAAAAGAGGGTAGAGGATCTAAAG
ATGCTCTATAGTGCCTATGCAATGGAGGTACTTTCAGATGGACATCTTAACGATGACAAGCTTGCGGCTTTGAATCAACT
GAGGAATATATTTGGACTGGCGAAGTACGAAGCAGAAGCAATCATCACAGATGTCAAGGCTCGAGTATTTCAGACCTACT
AAATTCTTTAACNATGAGTTGGCTGCGACCCCAAAGAAGGCAGAGTTCCTCCAAGATATCTGCGAAGAGTTGCAATTTGA
TCCTCTCAACTTGCAAGTAAGATGCATGAAGGTNCCATCCTGACACCTTCCCTTGTTCCACCACTAGTTTCACAACGTAG
CTGCCCTGACCGCCTTGAAATCTGGGCAAATTGAGAACTGGGTTTCTCTTGGTGGCTCTATCTATATATATGGTACTTAG
AGAAAATAACATTATAATATTGCAGGCCCTATTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7861.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis