Browse Element(s) Details


Os.7868.1.S1_at

Description gb:AK059435.1
DB_XREF= gi:32969453
TID=Os.7868.1
CNT=66
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F10, full insert sequence.
FL= gb:AK061646.1 gb:AK059435.1 gb:AK058287.1 gb:AK069333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1717011/11Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17150Os.7948.1.S1_a_at11/111+9856128..9857526expressed protein
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17170Os.7868.1.S1_at11/111+9871104..9873729Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
LOC_Os01g17180Os.25964.1.S2_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.25964.1.S1_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180OsAffx.2024.1.S1_at10/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.49920.1.S1_at1/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17190Os.19793.1.S1_at11/111+9884416..9886104Calmodulin, putative, expressed
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7868.1.S1_at--242--3371Chr01:9873151..9873175 (25 bp)
CACCTCGTGTGTTCCTTTGTAAAGT
LOC_Os01g17170
Os.7868.1.S1_at--989--2831Chr01:9873339..9873363 (25 bp)
AAGTATCTCTTAGCTGTGCTCTGCA
LOC_Os01g17170
Os.7868.1.S1_at--965--1611Chr01:9873350..9873374 (25 bp)
AGCTGTGCTCTGCATTATGGCATAA
LOC_Os01g17170
Os.7868.1.S1_at--369--10871Chr01:9873456..9873480 (25 bp)
TTGGATCTAACATGACACGCACCCA
LOC_Os01g17170
Os.7868.1.S1_at--639--51Chr01:9873484..9873508 (25 bp)
ATTGTTGCCATAGTTCGTGAGCCGC
LOC_Os01g17170
Os.7868.1.S1_at--878--5871Chr01:9873502..9873526 (25 bp)
GAGCCGCAATCTCTATTTTTGTCGG
LOC_Os01g17170
Os.7868.1.S1_at--308--10451Chr01:9873541..9873565 (25 bp)
TTAATCTTTACTATCACGACCGGAG
LOC_Os01g17170
Os.7868.1.S1_at--1078--5371Chr01:9873565..9873589 (25 bp)
GAAGAATGCCGTTACAGTGCGATAT
LOC_Os01g17170
Os.7868.1.S1_at--734--7211Chr01:9873581..9873605 (25 bp)
GTGCGATATGGTGCCGGGAACATTC
LOC_Os01g17170
Os.7868.1.S1_at--405--7611Chr01:9873596..9873620 (25 bp)
GGGAACATTCCTGACGTGATAGCAC
LOC_Os01g17170
Os.7868.1.S1_at--1014--9711Chr01:9873647..9873671 (25 bp)
TCAAGCAATTGCAGGGAGTTTCGAT
LOC_Os01g17170
Target Sequence 
CACCTCGTGTGTTCCTTTGTAAAGTATTGAGACTTCAACAATGTACCATTTGGCAAAGNGTTTTGTTATGATCTCCATGT
AAGTGGCAGTGAACTGCATCACAGTGGGGGTTACAGTTTTCCAACAGAAGGGTAATTATATGATGTTTTGGGGTTGTTGA
TACTTCATACTTAAGTTCCTTAGCATCCTAAGTATCTCTTAGCTGTGCTCTGCATTATGGCATAATGTTTGGTCTTGGTG
AAGGTGAATAGTGACGCCAACTACTGAAAACCTGGACAATGCAAGTGTTGGAAGATGTTGTAAATGNTTGGATCTAACAT
GACACGCACCCACCTATTGTTGCCATAGTTCGTGAGCCGCAATCTCTATTTTTGTCGGAAAGGAAAAGAGTATTAATCTT
TACTATCACGACCGGAGAAGAATGCCGTTACAGTGCGATATGGTGCCGGGAACATTCCTGACGTGATAGCACGTTCAAGT
GATAGACAAACTATTTTTTCAAGCAATTGCAGGGAGTTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis