Browse Element(s) Details


Os.7891.2.S1_at

Description gb:AK105097.1
DB_XREF= gi:32990306
TID=Os.7891.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-B11, full insert sequence.
FL= gb:AK105097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1666010/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16610Os.9431.1.A1_a_at11/118+10153890..10159336N terminus of Rad21/Rec8 like protein, expressed
LOC_Os08g16620OsAffx.17027.1.S1_at11/118+10162020..10163102hypothetical protein
LOC_Os08g16630OsAffx.17028.1.S1_at10/118+10171942..10173452F-box domain containing protein
LOC_Os08g16640OsAffx.5843.1.S1_at11/118+10174556..10174951hypothetical protein
LOC_Os08g16650OsAffx.17029.1.S1_at11/118+10181751..10183076hypothetical protein
LOC_Os08g16660Os.7891.2.S1_at10/118+10183796..10186859Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g16670OsAffx.17030.1.S1_at11/118+10191817..10195370F-box domain containing protein
LOC_Os08g16680Os.46785.2.S1_x_at2/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.442.1.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.30226.2.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16690OsAffx.5844.1.S1_at10/118+10201181..10202956hypothetical protein
LOC_Os08g16690Os.54043.1.S1_at1/118+10201181..10202956hypothetical protein
LOC_Os08g16700OsAffx.5845.1.S1_at11/118+10206743..10207506hypothetical protein
LOC_Os08g16710Os.54043.1.S1_at11/118+10211422..10214225F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7891.2.S1_at--985--1651Chr08:10184253..10184277 (25 bp)
AGCCGCCGTTCTACTTCATGAACGT
LOC_Os08g16660
Os.7891.2.S1_at--628--9891Chr08:10184242..10184266 (25 bp)
TACTTCATGAACGTGACCGGCGCGT
LOC_Os08g16660
Os.7891.2.S1_at--923--4811Chr08:10184037..10184061 (25 bp)
GCTACAACCTGACCGGGCACGACGA
LOC_Os08g16660
Os.7891.2.S1_at--443--7351Chr08:10184011..10184035 (25 bp)
GTGAAGGTGCCATTGCTGACGCTGC
LOC_Os08g16660
Os.7891.2.S1_at--409--4091Chr08:10183958..10183982 (25 bp)
CGACGCTGCCGGGATGCTGTTCATG
LOC_Os08g16660
Os.7891.2.S1_at--893--851Chr08:10183900..10183924 (25 bp)
ATGGCGAGCCTCTCATTCGAAGACC
LOC_Os08g16660
Os.7891.2.S1_at--1034--9351Chr08:10183884..10183908 (25 bp)
TCGAAGACCAGACGCCCATTATTGG
LOC_Os08g16660
Os.7891.2.S1_at--674--5791Chr08:10183874..10183898 (25 bp)
GACGCCCATTATTGGCAACTACCAG
LOC_Os08g16660
Os.7891.2.S1_at--435--6911Chr08:10183829..10183853 (25 bp)
GTATGACACTGTGGGCTCAAGGCTA
LOC_Os08g16660
Os.7891.2.S1_at--814--8311Chr08:10183816..10183840 (25 bp)
GGCTCAAGGCTAGGCTTTGCTGATG
LOC_Os08g16660
Os.7891.2.S1_at--480--1111Chr08:10183769..10183793 (25 bp)
AGTACTATTCCCTAACTAGAATTTG
NONE
Target Sequence 
AGCCGCCGTTCTACTTCATGAACGTGACCGGCGCGTCCGTCGGCGGCGCCGCGGTGGCCGCGGCGGGGCTCGGTGCCGCC
AACGTCCTCCTCGACTCCGGCACGGTGATCACGCGCCTCGCGCCGTCGGTGTACCGCGCCGTGCGCGCCGAGTTCGCGCG
GCAGTTCGGGGCGGAGCGCTACCCGGCGGCGCCGCCCTTCTCGCTGCTCGACGCGTGCTACAACCTGACCGGGCACGACG
AGGTGAAGGTGCCATTGCTGACGCTGCGCCTCGAGGGCGGCGCCGACATGACCGTCGACGCTGCCGGGATGCTGTTCATG
GCGAGGAAGGATGGGTCGCAGGTGTGCTTGGCCATGGCGAGCCTCTCATTCGAAGACCAGACGCCCATTATTGGCAACTA
CCAGCAGAAGAACAAGAGGGTAGTGTATGACACTGTGGGCTCAAGGCTAGGCTTTGCTGATGAGGATTGTAGCTATGCAT
AATTAGTACTATTCCCTAACTAGAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7891.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis