Browse Element(s) Details


Os.7926.1.S1_at

Description gb:AK059558.1
DB_XREF= gi:32969576
TID=Os.7926.1
CNT=99
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7926 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to ribosomal protein S5 gene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G10, full insert sequence.
FL= gb:AK059558.1 gb:AK103918.1 gb:AK059823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2919011/1140S ribosomal protein S5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29150Os.56347.1.S1_at11/1111+16395771..16397574expressed protein
LOC_Os11g29160NANA11+16402859..16404366hypothetical protein
LOC_Os11g29170NANA11+16407053..16408821retrotransposon protein, putative, unclassified
LOC_Os11g29180NANA11+16412969..16413754retrotransposon protein, putative, unclassified
LOC_Os11g29190Os.7926.1.S1_at11/1111+16415978..1641805640S ribosomal protein S5, putative, expressed
LOC_Os11g29200Os.18823.1.S1_at11/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200OsAffx.8676.1.S1_at4/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200Os.13521.1.S1_at2/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29210OsAffx.7243.1.S1_s_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210OsAffx.7243.1.S1_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210Os.20242.1.S1_at10/1111+16435807..16437652expressed protein
LOC_Os11g29220OsAffx.31198.1.S1_at11/1111+16439574..16439957hypothetical protein
LOC_Os11g29230Os.51222.1.S1_at11/1111+16441796..16444996PPR986-12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005840cellular_componentribosome
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7926.1.S1_at--461--9711Chr11:16416611..16416631 (21 bp)
TCAACAGTGGCCCTCGTGAGGATGC
LOC_Os11g29190
Os.7926.1.S1_at--491--4291Chr11:16416600..16416624 (25 bp)
CCTCGTGAGGATGCGACCCGTATTG
LOC_Os11g29190
Os.7926.1.S1_at--618--991Chr11:16416593..16416617 (25 bp)
AGGATGCGACCCGTATTGGGTCTGC
LOC_Os11g29190
Os.7926.1.S1_at--549--1951Chr11:16416495..16416519 (25 bp)
ACTGGTGCCAGGGAGAGCGCCTTCA
LOC_Os11g29190
Os.7926.1.S1_at--470--6111Chr11:16416450..16416474 (25 bp)
GAGTGCCTTGCTGACGAGCTTATTA
LOC_Os11g29190
Os.7926.1.S1_at--585--3851Chr11:16416440..16416464 (25 bp)
CTGACGAGCTTATTAATGCCGCCAA
LOC_Os11g29190
Os.7926.1.S1_at--911--8411Chr11:16416273..16416297 (25 bp)
GGCCAACCGTTGAGTGGTGATCCCA
LOC_Os11g29190
Os.7926.1.S1_at--68--6131Chr11:16416262..16416286 (25 bp)
GAGTGGTGATCCCATGTCATTGTGC
LOC_Os11g29190
Os.7926.1.S1_at--926--6371Chr11:16416255..16416279 (25 bp)
GATCCCATGTCATTGTGCTAAAGCT
LOC_Os11g29190
Os.7926.1.S1_at--656--2351Chr11:16416236..16416260 (25 bp)
AAAGCTCTTGCGCTGTTTGGCAGGA
LOC_Os11g29190
Os.7926.1.S1_at--1073--9571Chr11:16416231..16416255 (25 bp)
TCTTGCGCTGTTTGGCAGGACTATA
LOC_Os11g29190
Target Sequence 
TCAACAGTGGCCCTCGTGAGGATGCGACCCGTATTGGGTCTGCGGGTGCTGTGAGGAGGCAGGCTGTGGATATCTCTCCC
TTGAGGAGGGTCAACCAGGCAATCTACCTCCTCACCACTGGTGCCAGGGAGAGCGCCTTCAGGAACATCAAGACCATTGC
TGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGCTATGCCATCAAGAAGAAGGATGAGATCG
AGCGTGTTGCCAAGGCCAACCGTTGAGTGGTGATCCCATGTCATTGTGCTAAAGCTCTTGCGCTGTTTGGCAGGACTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis