Browse Element(s) Details


Os.7939.1.S1_at

Description gb:AK072537.1
DB_XREF= gi:32982560
TID=Os.7939.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133N21, full insert sequence.
FL= gb:AK107350.1 gb:AK072537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5075011/11AAA-type ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed
LOC_Os05g50730OsAffx.4679.1.S1_at11/115+28993775..28995257expressed protein
LOC_Os05g50730Os.54733.1.S1_at10/115+28993775..28995257expressed protein
LOC_Os05g50740OsAffx.22940.2.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.1.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.3.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.3.S1_x_at9/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.18.S1_x_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.2.S1_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.31552.2.S1_at1/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50750Os.7939.1.S1_at11/115+29010289..29015582AAA-type ATPase family protein, putative, expressed
LOC_Os05g50750Os.32943.2.S1_x_at1/115+29010289..29015582AAA-type ATPase family protein, putative, expressed
LOC_Os05g50760NANA5+29023326..29023754hypothetical protein
LOC_Os05g50770Os.54485.1.S1_at2/115+29036431..29038295C4-dicarboxylate transporter/malic acid transport family protein, putative
LOC_Os05g50770Os.5608.3.S1_x_at1/115+29036431..29038295C4-dicarboxylate transporter/malic acid transport family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7939.1.S1_at--95--2891Chr05:29010814..29010838 (25 bp)
AAGGGACAATTGACCTCAGGCCACT
LOC_Os05g50750
Os.7939.1.S1_at--355--9631Chr05:29010799..29010823 (25 bp)
TCAGGCCACTGACGATGGAAGACTT
LOC_Os05g50750
Os.7939.1.S1_at--364--3291Chr05:29010684..29010790 (25 bp)
CAAAGAATCAAGTTGCTGCGAGCTT
LOC_Os05g50750
Os.7939.1.S1_at--868--4351Chr05:29010657..29010681 (25 bp)
CCACCGAGGGTGCTGTAATGAATGA
LOC_Os05g50750
Os.7939.1.S1_at--874--1511Chr05:29010585..29010609 (25 bp)
AGCAGCAGCTGACGTACTTCTTGTA
LOC_Os05g50750
Os.7939.1.S1_at--60--3071Chr05:29010558..29010582 (25 bp)
AATCATGCAAGCTTGGTCCCAGGAA
LOC_Os05g50750
Os.7939.1.S1_at--515--9311Chr05:29010542..29010566 (25 bp)
TCCCAGGAAGGCCAGGATTGCCTGC
LOC_Os05g50750
Os.7939.1.S1_at--773--7911Chr05:29010463..29010487 (25 bp)
GGATTCTCTTCGTTTGTTAGTCTGT
LOC_Os05g50750
Os.7939.1.S1_at--547--8331Chr05:29010380..29010404 (25 bp)
GGCTGTTGCGATGTAAAGCTTCAGT
LOC_Os05g50750
Os.7939.1.S1_at--845--2691Chr05:29010365..29010389 (25 bp)
AAGCTTCAGTTAGTTTAGCCATAGA
LOC_Os05g50750
Os.7939.1.S1_at--134--3671Chr05:29010323..29010347 (25 bp)
CTTACATATGTTCGATGCGTAGTAT
LOC_Os05g50750
Target Sequence 
AAGGGACAATTGACCTCAGGCCACTGACGATGGAAGACTTNGAGGCAGGCAAAGAATCAAGTTGCTGCGAGCTTCGCCAC
CGAGGGTGCTGTAATGAATGAGCTGAAGCAATGGAACGACCTATACGGAGAAGGTGGCTCCAGGAAGAAGCAGCAGCTGA
CGTACTTCTTGTAGAAATCATGCAAGCTTGGTCCCAGGAAGGCCAGGATTGCCTGCGGCTGTGGAGAAGAGGAATTCAGT
GGAGTAGAGCANGAGTTTGGTAGTGGGAAAGGATTCTCTTCGTTTGTTAGTCTGTACTTGGATTGATTAAGCGGTTTATA
TTGTAATCATTCATCTATAAGTAATTTTAGCTTGGCTGTTGCGATGTAAAGCTTCAGTTAGTTTAGCCATAGAAAGCTGT
GATGTAAATTCTTACATATGTTCGATGCGTAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis