Browse Element(s) Details


Os.7945.1.S1_at

Description gb:AF094774.1
DB_XREF= gi:3789949
GEN=GOS2
TID=Os.7945.1
CNT=491
FEA=FLmRNA
TIER=FL+Stack
STK=253
UG=Os.7945 (NCBI UniGene Cluster)
DEF=Oryza sativa translation initiation factor (GOS2) mRNA, complete cds.
PROD=translation initiation factor
FL= gb:AF094774.1 gb:AK120697.1 gb:AK105037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3458911/11Protein translation factor SUI1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34540OsAffx.28748.1.S1_at10/117+20705661..20707120hypothetical protein
LOC_Os07g34550NANA7+20711674..20715734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34560NANA7+20719250..20719540hypothetical protein
LOC_Os07g34570Os.12767.1.S1_a_at11/117+20722887..20724380Thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed
LOC_Os07g34570OsAffx.29087.1.S1_x_at1/117+20722887..20724380Thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed
LOC_Os07g34580Os.9967.2.S1_x_at11/117+20727712..20728562xyloglucan endotransglucosylase/hydrolase protein 8 precursor, putative, expressed
LOC_Os07g34589Os.7945.1.S1_at11/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.7945.1.S1_s_at11/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.11101.1.S1_a_at1/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.24594.1.A1_s_at1/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34598Os.9987.1.S1_at11/117+20737812..20747764Tyrosyl-DNA phosphodiesterase family protein, expressed
LOC_Os07g34610Os.10487.1.S1_at10/117+20747982..20750138Oral cancer overexpressed protein 1 homolog, putative, expressed
LOC_Os07g34620Os.7660.1.S1_at11/117+20750572..20752817expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7945.1.S1_at--708--10171Chr07:20731700..20731724 (25 bp)
TATACTTGGTTGTGTACATGCCTGC
LOC_Os07g34589
Os.7945.1.S1_at--281--9891Chr07:20731698..20731722 (25 bp)
TACTTGGTTGTGTACATGCCTGCGT
LOC_Os07g34589
Os.7945.1.S1_at--513--2071Chr07:20731697..20731721 (25 bp)
ACTTGGTTGTGTACATGCCTGCGTG
LOC_Os07g34589
Os.7945.1.S1_at--772--3611Chr07:20731696..20731720 (25 bp)
CTTGGTTGTGTACATGCCTGCGTGT
LOC_Os07g34589
Os.7945.1.S1_at--949--8571Chr07:20731694..20731718 (25 bp)
TGGTTGTGTACATGCCTGCGTGTTC
LOC_Os07g34589
Os.7945.1.S1_at--1018--7911Chr07:20731693..20731717 (25 bp)
GGTTGTGTACATGCCTGCGTGTTCC
LOC_Os07g34589
Os.7945.1.S1_at--565--10831Chr07:20731691..20731715 (25 bp)
TTGTGTACATGCCTGCGTGTTCCAT
LOC_Os07g34589
Os.7945.1.S1_at--833--8891Chr07:20731633..20731657 (25 bp)
TGAGTGTATGCTTGTTACCCGTGTG
LOC_Os07g34589
Os.7945.1.S1_at--97--8771Chr07:20731629..20731653 (25 bp)
TGTATGCTTGTTACCCGTGTGTTGA
LOC_Os07g34589
Os.7945.1.S1_at--619--8711Chr07:20731566..20731590 (25 bp)
TGTCCCTCTTTCATCAAGATTGAAT
LOC_Os07g34589
Os.7945.1.S1_at--936--7231Chr07:20731565..20731589 (25 bp)
GTCCCTCTTTCATCAAGATTGAATA
LOC_Os07g34589
Target Sequence 
TATACTTGGTTGTGTACATGCCTGCGTGTTCCATTGTACACACAAAACCTAGCCACCTCTTGACTCTTGAGTGTATGCTT
GTTACCCGTGTGTTGAAGTTTGTAAGAGGCACCATCACTATAGATGATGGCTTGTGTCCCTCTTTCATCAAGATTGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis