Browse Element(s) Details


Os.7969.1.S1_x_at

Description gb:AK067246.1
DB_XREF= gi:32977264
TID=Os.7969.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7969 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097H21, full insert sequence.
FL= gb:AK067246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0127011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01210OsAffx.5674.1.S1_at11/118+141542..142108Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01220Os.9488.1.S1_at11/118+145561..147105Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01230NANA8+148536..150233hypothetical protein
LOC_Os08g01240Os.39278.1.A1_at11/118+152768..153560expressed protein
LOC_Os08g01240Os.247.1.S1_at1/118+152768..153560expressed protein
LOC_Os08g01250Os.47130.4.A1_x_at1/118+157810..158136retrotransposon protein, putative, unclassified
LOC_Os08g01260OsAffx.5675.1.S1_at11/118+161613..162236VQ motif family protein, expressed
LOC_Os08g01270Os.7969.1.S1_x_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270Os.7969.2.S1_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270OsAffx.27799.1.S1_at1/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01280OsAffx.28973.1.S1_at11/118+176623..178954ACT domain containing protein
LOC_Os08g01290Os.27120.1.S2_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01290Os.27120.1.S1_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01300NANA8+184899..188158zinc finger family protein, putative
LOC_Os08g01310Os.9721.1.S1_at10/118+189472..194084MAP3K-like protein kinase, putative, expressed
LOC_Os08g01320Os.15790.1.S1_at11/118+195020..197495BTB/POZ domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7969.1.S1_x_at--150--6631Chr08:166867..166984 (25 bp)
GTTTGGCCCTGGTCCCATACGATAA
LOC_Os08g01270
Os.7969.1.S1_x_at--1134--311Chr08:166851..166875 (25 bp)
ATACGATAACATGACGCCCTTGCAG
LOC_Os08g01270
Os.7969.1.S1_x_at--777--6051Chr08:166503..166527 (25 bp)
GAGATTCCCTCAAGTGTGAACCCGA
LOC_Os08g01270
Os.7969.1.S1_x_at--660--771Chr08:166436..166460 (25 bp)
ATGTCCGGCCTGTTTTTGCAGAGAT
LOC_Os08g01270
Os.7969.1.S1_x_at--714--5371Chr08:166398..166422 (25 bp)
GAAGACATCTTACAGCATGCCCAGG
LOC_Os08g01270
Os.7969.1.S1_x_at--620--1011Chr08:166051..166075 (25 bp)
AGGTTATCTTGCTCTTTTGTTTTCA
LOC_Os08g01270
Os.7969.1.S1_x_at--223--6971Chr08:166000..166024 (25 bp)
GTAGCTGCTTTCTTAGCAACTCCAC
LOC_Os08g01270
Os.7969.1.S1_x_at--94--7411Chr08:165970..165994 (25 bp)
GTGTAATTTCTTTAGGTCTCCTTCA
LOC_Os08g01270
Os.7969.1.S1_x_at--140--2811Chr08:165846..165870 (25 bp)
AAGATGACCATTGTTTGCTTCCCAT
LOC_Os08g01270
Os.7969.1.S1_x_at--740--1671Chr08:165809..165833 (25 bp)
AGCCGACCTTAGAACACTTGTACAG
LOC_Os08g01270
Os.7969.1.S1_x_at--1042--7011Chr08:165790..165814 (25 bp)
GTACAGCTGTAGTTGTTGCACCTAA
LOC_Os08g01270
Target Sequence 
GTTTGGCCCTGGTCCCATACGATAACATGACGCCCTTGCAGGCTGCACTAGGAGTAAGGCAGGGATTTCGCTTGGAGATT
CCCTCAAGTGTGAACCCGAGATTGTCAAAACTGATTCAGCGGTGTTGGGACGAAGATCCTGATGTCCGGCCTGTTTTTGC
AGAGATTGTCATCGAACTTGAAGACATCTTACAGCATGCCCAGGCAAACAGCAGGGGAGCCAGTCGGCGTTCTAGAGCTA
AGATACAGAAGAAATCACCTCGATAGAGTATCATACCAAAGGTTATCTTGCTCTTTTGTTTTCATTCTTTTTGGTAAAAC
AGGCTAACTTGTAGCTGCTTTCTTAGCAACTCCACAGAATGTGTAATTTCTTTAGGTCTCCTTCAAATGAAGGTATATAT
GCGTATATATATGTACTTGCCGATTTGACGGCAGTAACAGAATGACTGCGAATTCACTGTTGGTGTCATCTGTGGACTGA
TTAGAAGATGACCATTGTTTGCTTCCCATCCTCGATGGCAAAGCCGACCTTAGAACACTTGTACAGCTGTAGTTGTTGCA
CCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7969.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis