Browse Element(s) Details


Os.7969.2.S1_at

Description gb:AK061938.1
DB_XREF= gi:32971956
TID=Os.7969.2
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7969 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-D07, full insert sequence.
FL= gb:AK061938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0127011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01210OsAffx.5674.1.S1_at11/118+141542..142108Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01220Os.9488.1.S1_at11/118+145561..147105Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01230NANA8+148536..150233hypothetical protein
LOC_Os08g01240Os.39278.1.A1_at11/118+152768..153560expressed protein
LOC_Os08g01240Os.247.1.S1_at1/118+152768..153560expressed protein
LOC_Os08g01250Os.47130.4.A1_x_at1/118+157810..158136retrotransposon protein, putative, unclassified
LOC_Os08g01260OsAffx.5675.1.S1_at11/118+161613..162236VQ motif family protein, expressed
LOC_Os08g01270Os.7969.1.S1_x_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270Os.7969.2.S1_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270OsAffx.27799.1.S1_at1/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01280OsAffx.28973.1.S1_at11/118+176623..178954ACT domain containing protein
LOC_Os08g01290Os.27120.1.S2_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01290Os.27120.1.S1_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01300NANA8+184899..188158zinc finger family protein, putative
LOC_Os08g01310Os.9721.1.S1_at10/118+189472..194084MAP3K-like protein kinase, putative, expressed
LOC_Os08g01320Os.15790.1.S1_at11/118+195020..197495BTB/POZ domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7969.2.S1_at--9--3691Chr08:165762..165786 (25 bp)
CTAGTACTTCGTATTATAGTGGCCT
LOC_Os08g01270
Os.7969.2.S1_at--787--1171Chr08:165760..165784 (25 bp)
AGTACTTCGTATTATAGTGGCCTTC
LOC_Os08g01270
Os.7969.2.S1_at--916--7011Chr08:165759..165783 (25 bp)
GTACTTCGTATTATAGTGGCCTTCG
LOC_Os08g01270
Os.7969.2.S1_at--564--9891Chr08:165758..165782 (25 bp)
TACTTCGTATTATAGTGGCCTTCGC
LOC_Os08g01270
Os.7969.2.S1_at--989--2051Chr08:165757..165781 (25 bp)
ACTTCGTATTATAGTGGCCTTCGCT
LOC_Os08g01270
Os.7969.2.S1_at--910--3631Chr08:165756..165780 (25 bp)
CTTCGTATTATAGTGGCCTTCGCTG
LOC_Os08g01270
Os.7969.2.S1_at--31--10611Chr08:165755..165779 (25 bp)
TTCGTATTATAGTGGCCTTCGCTGC
LOC_Os08g01270
Os.7969.2.S1_at--709--2111Chr08:165724..165748 (25 bp)
ACATGTATTTTACTGCATTCTTTAG
LOC_Os08g01270
Os.7969.2.S1_at--78--751Chr08:165722..165746 (25 bp)
ATGTATTTTACTGCATTCTTTAGTT
LOC_Os08g01270
Os.7969.2.S1_at--1083--6871Chr08:165720..165744 (25 bp)
GTATTTTACTGCATTCTTTAGTTAT
LOC_Os08g01270
Os.7969.2.S1_at--633--171Chr08:165718..165742 (25 bp)
ATTTTACTGCATTCTTTAGTTATTC
LOC_Os08g01270
Target Sequence 
CTAGTACTTCGTATTATAGTGGCCTTCGCTGCTCCTGTACATGTATTTTACTGCATTCTTTAGTTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7969.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis