Browse Element(s) Details


Os.7976.1.S1_a_at

Description gb:AY524972.1
DB_XREF= gi:42528294
GEN=BIHD1
TID=Os.7976.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7976 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) benzothiadiazole-induced homeodomain protein 1 (BIHD1) mRNA, complete cds.
PROD=benzothiadiazole-induced homeodomain protein 1
FL= gb:AY524972.1 gb:AK061393.1 gb:AK069994.1 gb:AK104713.1 gb:AK070543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4774011/11Associated with HOX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47702OsAffx.1626.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.28851.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.2.S1_at4/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.1.S1_s_at2/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.20341.2.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22674.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.24556.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22673.2.S1_x_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.9154.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47720OsAffx.22674.1.S1_at11/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_x_at2/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_at1/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47730OsAffx.13395.1.S1_x_at11/113+27000580..27002608Associated with HOX family protein
LOC_Os03g47740Os.7976.1.S1_a_at11/113+27006206..27012857Associated with HOX family protein, expressed
LOC_Os03g47749Os.52389.1.S1_x_at3/113+27030333..27031212hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7976.1.S1_a_at--946--6471Chr03:27007295..27007319 (25 bp)
GATACGGGAACAGCAATGTGTCATT
LOC_Os03g47740
Os.7976.1.S1_a_at--625--7451Chr03:27007278..27007302 (25 bp)
GTGTCATTGACACTTGGCTTACAGC
LOC_Os03g47740
Os.7976.1.S1_a_at--68--8971Chr03:27007271..27007295 (25 bp)
TGACACTTGGCTTACAGCATCCTGA
LOC_Os03g47740
Os.7976.1.S1_a_at--797--8291Chr03:27007263..27007287 (25 bp)
GGCTTACAGCATCCTGACAACAGGC
LOC_Os03g47740
Os.7976.1.S1_a_at--523--5611Chr03:27007248..27007272 (25 bp)
GACAACAGGCTTTCGGTACAGAACA
LOC_Os03g47740
Os.7976.1.S1_a_at--1084--7831Chr03:27007234..27007258 (25 bp)
GGTACAGAACACTCATCAGCCAGGT
LOC_Os03g47740
Os.7976.1.S1_a_at--753--391Chr03:27007220..27007244 (25 bp)
ATCAGCCAGGTTTCGCCGGTGCTGG
LOC_Os03g47740
Os.7976.1.S1_a_at--411--1431Chr03:27007195..27007219 (25 bp)
AGAAGAAATTTACAACTCCACCGCT
LOC_Os03g47740
Os.7976.1.S1_a_at--536--4131Chr03:27007174..27007198 (25 bp)
CGCTTCTCTCGGTGTCGCTGCAGCT
LOC_Os03g47740
Os.7976.1.S1_a_at--960--9031Chr03:27007156..27007180 (25 bp)
TGCAGCTTCCTCTTCGGACTACGAA
LOC_Os03g47740
Os.7976.1.S1_a_at--1034--8111Chr03:27007141..27007165 (25 bp)
GGACTACGAATCCACGAACCAAATA
LOC_Os03g47740
Target Sequence 
GATACGGGAACAGCAATGTGTCATTGACACTTGGCTTACAGCATCCTGACAACAGGCTTTCGGTACAGAACACTCATCAG
CCAGGTTTCGCCGGTGCTGGAGAAGAAATTTACAACTCCACCGCTTCTCTCGGTGTCGCTGCAGCTTCCTCTTCGGACTA
CGAATCCACGAACCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7976.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis