Browse Element(s) Details


Os.8025.1.S1_at

Description gb:AK121325.1
DB_XREF= gi:37990948
TID=Os.8025.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023117E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117E05, full insert sequence.
FL= gb:AK121325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0837011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08330Os.3738.1.S1_s_at11/1111+4383363..4393710DNA polymerase delta catalytic subunit, putative, expressed
LOC_Os11g08340OsAffx.30879.1.S1_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08340OsAffx.30879.1.S1_x_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08350NANA11+4404481..4405032hypothetical protein
LOC_Os11g08360OsAffx.30880.2.S1_at11/1111+4405504..4405935hypothetical protein
LOC_Os11g08370Os.8025.1.S1_at11/1111+4409142..4411752Major Facilitator Superfamily protein, expressed
LOC_Os11g08380Os.54511.1.S1_at11/1111+4411814..44143371-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os11g08390OsAffx.23250.2.S1_x_at5/1111+4417725..4419270retrotransposon protein, putative, LINE subclass
LOC_Os11g08400OsAffx.30881.1.S1_at11/1111+4423984..4427141expressed protein
LOC_Os11g08410OsAffx.7045.1.S1_at11/1111+4428678..4429973GATA zinc finger family protein
LOC_Os11g08420OsAffx.30880.1.S1_at10/1111+4433956..4436013hypothetical protein
LOC_Os11g08430NANA11+4436703..4437254hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008514molecular_functionorganic anion transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8025.1.S1_at--438--2111Chr11:4411170..4411194 (25 bp)
ACAGTCGGGTTTGTCGTCTCAGCCA
LOC_Os11g08370
Os.8025.1.S1_at--690--2011Chr11:4411199..4411223 (25 bp)
ACTCATGGCCCTTCCATTATTCAGA
LOC_Os11g08370
Os.8025.1.S1_at--1057--3831Chr11:4411244..4411268 (25 bp)
CTGCTCATCAGTATCTCTTGGTTTT
LOC_Os11g08370
Os.8025.1.S1_at--555--9571Chr11:4411259..4411283 (25 bp)
TCTTGGTTTTCTGGCTCTAGGAAGG
LOC_Os11g08370
Os.8025.1.S1_at--98--7591Chr11:4411282..4411306 (25 bp)
GGGCAGGATTTGCTGTAAACCACAT
LOC_Os11g08370
Os.8025.1.S1_at--429--1251Chr11:4411376..4411400 (25 bp)
AGTTGGTGTTGGTCTCACAGGAAGA
LOC_Os11g08370
Os.8025.1.S1_at--1012--2811Chr11:4411448..4411472 (25 bp)
AAGTTGGAGGACAGTCTTCTTTGTT
LOC_Os11g08370
Os.8025.1.S1_at--1044--7431Chr11:4411586..4411610 (25 bp)
GTGTCAATTCTTAGGTTTTTTCCAG
LOC_Os11g08370
Os.8025.1.S1_at--45--5471Chr11:4411610..4411634 (25 bp)
GAACTTTTGGACTACCTGCCAATAG
LOC_Os11g08370
Os.8025.1.S1_at--537--10091Chr11:4411698..4411722 (25 bp)
TAGGCACTAACTCATGTTACTTCAT
LOC_Os11g08370
Os.8025.1.S1_at--773--6771Chr11:4411713..4411737 (25 bp)
GTTACTTCATTTAAGCTGTACTCAT
LOC_Os11g08370
Target Sequence 
ACAGTCGGGTTTGTCGTCTCAGCCATTGCACTCATGGCCCTTCCATTATTCAGAACACCTTCAGGGGCAATATTCTGCTC
ATCAGTATCTCTTGGTTTTCTGGCTCTAGGAAGGGCAGGATTTGCTGTAAACCACATGGATGTGGCTCCAAAATTTGCTG
GGATTGTGATGGGGATCTCAAACACAGCTGGGACTTTGGCAGGAATAGTTGGTGTTGGTCTCACAGGAAGAATTCTGGAG
GCAGCGAAGGCATCTAACATGGACCTGACAAGCNCGGAAAGTTGGAGGACAGTCTTCTTTGTTCCAGGATNCCTTTGTAT
TTTCAGCNCCTTCATTTTCTTGATTTTCTCAACTGGGGAGAAGATCTTCGAATAGTCAGGTGATTATTTGTTGTTACTAA
CTTACGATGAGGGGAGGTGTCAATTCTTAGGTTTTTTCCAGAACTTTTGGACTACCTGCCAATAGATTTTAGGCAAAAAA
GAAGGGGACAAATTTTGCCTGTCAGAACAGATAGCAGTGATGATGTTATAGGCACTAACTCATGTTACTTCATTTAAGCT
GTACTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis