Browse Element(s) Details


Os.8108.1.S1_at

Description gb:AK111910.1
DB_XREF= gi:37988573
TID=Os.8108.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090H12, full insert sequence.
FL= gb:AK111964.1 gb:AK111910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1126011/11RING zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11220OsAffx.12823.1.S1_s_at11/113+5753850..5755369expressed protein
LOC_Os03g11220Os.25984.1.S1_at11/113+5753850..5755369expressed protein
LOC_Os03g11230Os.53716.1.S1_at11/113+5756916..5758499expressed protein
LOC_Os03g11240OsAffx.25051.1.S1_at11/113+5759106..5767948Nucleotidyltransferase domain containing protein, expressed
LOC_Os03g11250Os.51567.1.A1_at9/113+5775277..5776063expressed protein
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed
LOC_Os03g11270OsAffx.10203.1.S1_x_at1/113+5781097..5782221hypothetical protein
LOC_Os03g11280NANA3+5785498..5785976hypothetical protein
LOC_Os03g11290Os.16810.1.S1_at9/113+5786983..5791825expressed protein
LOC_Os03g11300OsAffx.25053.1.S1_at11/113+5793553..5795613expressed protein
LOC_Os03g11310Os.50947.1.S1_x_at11/113+5796992..5799853expressed protein
LOC_Os03g11310Os.24634.1.A1_s_at11/113+5796992..5799853expressed protein
LOC_Os03g11310OsAffx.12824.1.S1_at11/113+5796992..5799853expressed protein
LOC_Os03g11320Os.5477.1.S2_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320Os.5477.1.S1_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8108.1.S1_at--773--6691Chr03:5779689..5779713 (25 bp)
GTTCCATTCCCCTAGTCATGAAGAG
LOC_Os03g11260
Os.8108.1.S1_at--526--8991Chr03:5779707..5779731 (25 bp)
TGAAGAGCGCCATTCTTTATGCCCT
LOC_Os03g11260
Os.8108.1.S1_at--93--8631Chr03:5779734..5779758 (25 bp)
TGGTGGTGGCCCAAGTTCCAGTCAA
LOC_Os03g11260
Os.8108.1.S1_at--83--2831Chr03:5779746..5779770 (25 bp)
AAGTTCCAGTCAACACCATCGAAGA
LOC_Os03g11260
Os.8108.1.S1_at--387--9351Chr03:5779764..5779788 (25 bp)
TCGAAGACCTGCTCCACGAACAGAA
LOC_Os03g11260
Os.8108.1.S1_at--1157--1532Chr03:5779840..5779864 (25 bp)
AGCATCAGTGCATCTCTCCAAAAGA
LOC_Os03g11260
Os.8108.1.S1_at--68--2011Chr03:5779902..5779926 (25 bp)
ACTCGTGATAATTTTCCTTCTGATA
LOC_Os03g11260
Os.8108.1.S1_at--1105--3851Chr03:5779921..5779945 (25 bp)
CTGATAGTTCTATATGCTGTCCCTG
LOC_Os03g11260
Os.8108.1.S1_at--139--7091Chr03:5780154..5780178 (25 bp)
GTCAAGTGTGATTTCTTATCCATTC
LOC_Os03g11260
Os.8108.1.S1_at--771--10411Chr03:5780169..5780193 (25 bp)
TTATCCATTCGATTGAGGCCTTCAG
LOC_Os03g11260
Os.8108.1.S1_at--922--6211Chr03:5780183..5780207 (25 bp)
GAGGCCTTCAGGGACAGTAGTTGTA
LOC_Os03g11260
Target Sequence 
GTTCCATTCCCCTAGTCATGAAGAGCGCCATTCTTTATGCCCTTCTGGTGGTGGCCCAAGTTCCAGTCAACACCATCGAA
GACCTGCTCCACGAACAGAAAGCGCCAGTGGCAGAGAAAGGAGTGTTGCTGGCAACGTTTTCAATACTTACAGCATCAGT
GCATCTCTCCAAAAGATAATGTTGTCTTTTGTTCAGATGACAGCCAAGTTTCCACTCGTGATAATTTTCCTTCTGATAGT
TCTATATGCTGTCCCTGCAAGCGTAGCAGTTCTAGTATTGTATGTCCTTGTTACAGTTTTGTTTGCACTGCCGTCCTTTT
TGATCCTCTACTTTGCTTATCCCAGTTTGGATTGGCTCGTTAGAGAGATCTTCAATTGAGTTATATTGTACTCCANGTCA
TTACAGTTTATAACTCAGCAGCAGAAAATTTAGNANNNGCAATCTCATGTGCTCTGGGGGAGGATGTCAAGTGTGATTTC
TTATCCATTCGATTGAGGCCTTCAGGGACAGTAGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis